Cytobacillus pseudoceanisediminis: M5V91_07050
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Entry
M5V91_07050 CDS
T09231
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpss
Cytobacillus pseudoceanisediminis
Pathway
cpss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5V91_07050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpss03019
]
M5V91_07050
Messenger RNA biogenesis [BR:
cpss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M5V91_07050
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UQX55441
LinkDB
All DBs
Position
complement(1341491..1343164)
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AA seq
557 aa
AA seq
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MESNGKQLSIFSLGGINEIGKNMYVIQYDDDIVVIDAGGKFPDETLLGIDLIIPDITYLE
ENRDKIRGLIVTHGHEDHIGGVAYLLKKINIPVYATRFTLGLIELKLTEHRLLGDSELIT
IDSDSSLDFGKIGVSFFKVNHSIPDCLGIVFKTPEGNVVHTGDFKFDLTPVNQEHADIHR
MAEIGRSGVLALLSESTNAERSGFSPTEHIVGENIEEAFMKAPRKIIISTFASNVSRVQQ
VVAAVIRTNRKLVLLGRSMVNVVDVAIERGYLTVPEGMIVNPREAMNLAPEKVCILCTGS
QGEPMAALSRLSAGNYRDAEIHPEDTVILAASPIPGNERDVSKIIDNLFKLGARVIYGSG
SSTGMHVSGHGYQEDLKLMLTLMKPKYFIPIHGEYRMLHHHKLLAESIGVETGHTFIIKN
GDVVDIENGEARQTRRVPAGDTYVDGVGVGDIGSIVLRDRKQLSEDGMIVIVLTMSKNER
KMISRPDTISRGFVYARESEDLLREINRIAEKTVNDLPEQDKSQWNVIKQSIKKSLGQYL
FEKTKRKPMILPIIIEI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaaacggaaagcaactatccatattttctctgggcggcatcaatgaaattgga
aaaaacatgtatgtgatccaatatgatgacgatattgtcgtgattgatgccggagggaaa
ttccctgatgagacattattggggatcgatttgatcattccggacatcacataccttgag
gaaaaccgggataaaatccgcgggctgattgtcactcatggacatgaggatcatattggc
ggagttgcctatcttctcaaaaagatcaatataccggtttatgcgacccgatttacgctt
gggctgattgaattaaaattaacggagcatcgcctgctgggtgattcagagcttataacc
atagattctgactctagccttgatttcggtaaaataggcgttagctttttcaaggtgaat
catagcatccctgactgtctgggcattgttttcaagacgccagagggcaatgttgtccat
accggcgattttaaatttgacttaacccctgtaaatcaggagcatgctgatatccatagg
atggctgaaatcggccgcagtggagtgctggccctgctatcagaaagcacaaacgctgag
cggtctggcttttcgccaactgaacatattgtcggggaaaacattgaggaagcatttatg
aaagcaccacgcaagattatcatctcaactttcgcttccaatgtgagccgtgttcagcag
gttgtggccgctgtgattagaacaaaccgaaagctggtcctgcttggaaggagtatggta
aatgtcgtggatgtagctattgaacgcggttacctgacagttcctgagggtatgattgtg
aatccaagagaagcgatgaatctggctcctgaaaaggtgtgcatattatgtaccggcagc
cagggtgaaccgatggctgccctttcacggctctctgccggaaattaccgtgatgcagag
attcatcctgaggataccgtgattcttgcagcatccccaatcccggggaacgaacgcgat
gtctctaagattatcgacaacctgttcaagctgggagcccgggtgatatacggttcagga
agctcaacagggatgcatgtgtccggccacggctatcaggaggatttaaagcttatgctc
acattgatgaagccgaaatattttatcccgattcacggtgaatatagaatgcttcaccat
cataaattgcttgctgaatccatcggtgttgaaactgggcatacatttatcattaaaaat
ggggatgtcgttgatattgagaacggagaagcacgccagaccaggcgggtacctgccgga
gatacttatgttgatggagtgggggttggtgacattggcagcatcgtgctccgggacaga
aagcagctgtccgaggatgggatgattgtgatcgtactgaccatgagcaagaatgagcgc
aaaatgatatcaagacctgatacgatatcccgaggtttcgtctacgcacgggaatccgaa
gatttgctgagagaaataaatcggattgcggagaaaaccgtcaatgatcttccagaacag
gataaaagccagtggaatgtcatcaagcagagcattaagaaatcacttgggcagtattta
tttgaaaaaacaaagcgcaaaccaatgatcctgccgattataattgaaatataa
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