Cytobacillus pseudoceanisediminis: M5V91_20865
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Entry
M5V91_20865 CDS
T09231
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpss
Cytobacillus pseudoceanisediminis
Pathway
cpss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5V91_20865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpss03019
]
M5V91_20865
03009 Ribosome biogenesis [BR:
cpss03009
]
M5V91_20865
Enzymes [BR:
cpss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M5V91_20865
Messenger RNA biogenesis [BR:
cpss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M5V91_20865
Ribosome biogenesis [BR:
cpss03009
]
Prokaryotic type
rRNA helicases
M5V91_20865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF4422
NLBH
CA109-like
Motif
Other DBs
NCBI-ProteinID:
UQX53269
LinkDB
All DBs
Position
complement(3905333..3906811)
Genome browser
AA seq
492 aa
AA seq
DB search
MTKFQDLGISPATMKSLKRMGFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPM
IDKIDNTKDFIQGIVIAPTRELAIQVSEELYKIGYGKRTKVLSIYGGQDINRQIRALKNK
PHIIVGTPGRILDHINRKTMRLDHVHTAILDEADEMLNMGFIDDIEAILAQIPEERQTLL
FSATMPAPIRRMAERFMKEPQIVRVKAKEMTVSSIEQYYIEVHEKNKFDVLTRLLDIQSP
ELAIVFGRTKRRVDELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTK
RKMERMDAPTLDEALEGQQKAVMEKIMQTIEENNLESYKEAADELLAQKDASTVVQAVLK
MLTKEPDTTPVKLTEEKPLPSKRDRKPNDRSRGGYNGKGRQGGQKGSYKSRQGHTGKRQS
HNNRSNSSSSYR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaagtttcaagacttgggcatcagcccggcgacaatgaaatcactgaagcgaatg
ggatttgaagaagcgactcctattcaggcccagaccattccgttaagtttagagaataaa
gacctgatcggtcaggcgcagacaggaacaggaaaaactgctgcattcggaatcccgatg
attgataaaatcgacaacacgaaggatttcattcagggaattgtgattgctccgactcgc
gagctggcaattcaggtatcggaagaactgtataaaatcggctacggcaaaagaacgaaa
gtcctatccatttatggagggcaggatattaatcgccaaatccgcgccttgaagaacaaa
ccgcatatcattgttggaacgccaggacgtattttggaccacataaaccgcaaaacaatg
cgtcttgaccatgtccatacagccattcttgacgaagcggatgaaatgcttaacatggga
ttcattgatgatattgaagcaatccttgcccaaattccggaagagcgccagaccctgctt
ttctctgctacaatgcctgcgccaatccgcagaatggcagaacgcttcatgaaggaaccc
caaattgtccgcgtaaaagcaaaggaaatgactgtatcatctattgaacaatactatatt
gaagtgcatgaaaagaataaatttgatgtgctgacaagacttctggatattcaatcaccg
gaattggcaatcgtattcggacgtacaaagcgccgtgtcgatgaactggctgaagccttg
aatcttcgcggatacatggctgaaggaatccacggtgacttaagccaggctaaaaggatt
tctgttcttcgcaagttcaaagagggaagcattgacgtcctcgttgcaacagatgttgct
gcacgaggcttggatatttccggtgtcacacatgtatacaattttgatattcctcaggat
cctgaaagctatgttcaccgcatcggccgtacaggacgtgctggaaaaacaggtgttgcg
atgacattcattaatccgcgcgaaaaatcgtatctgcatgtcgtagaacgtacaaccaag
aggaaaatggaacgcatggatgctccaacactggatgaggcccttgaaggccagcagaaa
gcagtcatggaaaaaatcatgcaaaccattgaggaaaacaatcttgagagctataaagaa
gcagctgatgagctccttgcacaaaaggatgcttcaacagtggttcaagccgtgctgaag
atgctgacaaaagaaccggatacaactcctgttaaattaacagaggaaaagccgcttcca
tctaagcgcgacagaaagccgaatgaccgcagccgcggaggctataacggaaaaggcaga
caaggaggccagaaaggatcatataaatcccgtcaaggccacactggaaaacgtcaaagc
cacaataaccgttcaaatagcagcagcagctatcgttaa
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