Cytobacillus pseudoceanisediminis: M5V91_21535
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Entry
M5V91_21535 CDS
T09231
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpss
Cytobacillus pseudoceanisediminis
Pathway
cpss03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpss00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M5V91_21535 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpss03021
]
M5V91_21535 (rpoC)
03400 DNA repair and recombination proteins [BR:
cpss03400
]
M5V91_21535 (rpoC)
Enzymes [BR:
cpss01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M5V91_21535 (rpoC)
Transcription machinery [BR:
cpss03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M5V91_21535 (rpoC)
DNA repair and recombination proteins [BR:
cpss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M5V91_21535 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UQX53371
LinkDB
All DBs
Position
complement(4014593..4018192)
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTALEKKQLLSEKEYRAYREKYGNKFQASMGAESIKKLLS
DIDLNKEVDTLKEELKTAQGQRRTRAIKRLEVLEAFRGSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMIFNDTSEALLAYQNGYVHLHTRVAVH
AGSLNNQTFTEEQNKKLLLTTVGKLVFNEILPETFPYINEPTKENLEIETPEKYFVEPAT
DVAAVIKEMPLVDPFKKKILGNIIAEVFKRFKITETSKMLDRMKNLGFRYSTKAGITVGV
ADIVVLGEKQEIIHEAQSKVDNVMKQFRRGLITEDERYDRVISIWSAAKDNIQAKLMKSL
DKSNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVRDDDCGTDRGLLIASLKDGTEVIEALE
ERLIGRYARRNIKHPETNEVIVAENGLITEDIAVEIVSAGIEKVWIRSAFTCNTRHGVCK
KCYGRNLATGQEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEIDGVVVGINEGRDRQHEIVVQGEVESKTYTAPYTARLKVAVNDEVVR
GQELTEGSIDPKELIKVKDVTAVQEYLLREVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
IDAAETDVLPGTLLDIHQFTDANEKALLAGKMPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRRAEPYTNEETAENTVTVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataatttcgagtatatgaaaataggtcttgcttcaccggataagata
cgttcttggtcacatggtgaggttaagaagcctgaaacgatcaactatcgtacattaaaa
ccagaaaaagacggtttattctgcgaacgcattttcggaccgacaaaagactgggaatgt
cactgcggaaagtataagcgtgttcgatacaaaggcgttgtctgtgatcgatgcggcgtt
gaagtaacacgtgcaaaagtgcgccgtgaaagaatgggccacattgaacttgcagcccct
gtatcccacatttggtacttcaaaggcatcccaagccgtatgggtcttgtgctggacatg
tctccgcgtgcacttgaggaagttatttacttcgcttcttatgttgtaacggatcctggc
gatacggctcttgaaaagaagcagctgctttccgaaaaagaataccgtgcataccgtgaa
aagtatggaaacaagttccaggcatccatgggtgctgaatccattaagaaacttctttct
gacatagacctcaacaaagaagtagatacccttaaagaggaactgaaaactgcccagggc
cagcgacgcactcgtgctatcaagcgcctggaagttcttgaagctttccgtggctccgga
aatgaaccatcctggatgattcttgacgttcttccggttattcctccggaacttcgtccg
atggtacagctggatggcggacgttttgccacttccgacttaaatgatctgtaccgccgt
gtaatcaaccgcaacaaccgcctaaagcgtctattggaccttggtgctccaagcattatt
gttcaaaacgaaaagcgcatgcttcaggaagcagtagatgcgctaatcgataacggccgc
cgcggaagaccggtaacaggaccaggaaaccgtccgttaaaatccctgtcgcatatgctt
aaagggaagcagggacgtttccgccaaaacttgcttggtaagcgtgttgactattctgga
cgatcggttatcgtcgtaggaccaaacttaaaaatgtaccagtgcggacttccgaaagaa
atggcattggaattattcaagccattcgttatgaaggaattggtggaaaaaggcttagcc
cacaacatcaagtctgcaaaacgcaagatcgaaagagtgcagccggaagtttgggatgtt
cttgaaagtgtcattaaagagcaccctgtattgcttaaccgtgccccaactcttcacaga
ctgggcattcaggcatttgaaccgacattggtggaaggacgcgctattcgtcttcatccg
cttgtgtgtactgcatacaacgcagactttgacggtgaccaaatggctgttcacgtgccg
ctttcagcagaagcacaggcagaagcccgcctgctgatgcttgcagcacagaacatcctg
aacccgaaagacggtaagccagttgttactccttcacaggatatggtattaggtaactat
tacttgacacttgaaagagccggcgctgtcggagaaggcatgatcttcaatgatacaagt
gaagcactgcttgcctatcagaacggctatgttcatttgcatacaagagtagctgtccat
gctggatccttgaataaccagacattcaccgaagaacaaaataaaaagcttttattaact
acggttggtaagcttgttttcaacgagattctgcctgagacattcccatacatcaacgag
cctacaaaagaaaaccttgagattgaaactcctgagaaatactttgtagagcctgctact
gatgtagctgctgttatcaaggaaatgcctctagtagatccgtttaagaaaaagatcctt
ggaaacatcattgcggaagtcttcaaacgctttaaaatcactgaaacgtctaaaatgctt
gaccgcatgaaaaatcttggattcagatactccacaaaagccggcatcacggttggtgta
gctgacatcgtggtattgggcgagaagcaggaaattatccacgaagcacaaagcaaggtt
gataatgtcatgaaacagttcagacgcggtcttattaccgaagatgagcgttatgatcgt
gttatttcaatctggagtgcagcgaaggataatatccaggcaaaattgatgaagtcattg
gataaatccaacccaatcttcatgatgagtgactccggtgcccgtggtaacgcatccaac
ttcactcagttagctggtatgcgcggactcatggccaacccggctggacgtatcattgaa
ttaccgattaaatcaagtttccgtgaaggtttaacagtactcgagtactttatttctaca
cacggtgcccgtaaaggacttgccgatacagcccttaaaacagctgactcaggttacctg
actcgccgtctggtagacgtagcacaggatgtcatcgttcgtgatgatgattgtggaact
gaccgcggattgctgatcgcatctcttaaagatggtactgaagtcattgaagcgcttgaa
gagcgtctgattggccgttatgcaagaagaaatatcaaacatcctgagacaaatgaagtg
attgtagctgaaaacggattgatcactgaagatattgcagttgaaattgtttcagccggc
atcgaaaaagtatggatccgttccgcgttcacatgcaacacacgtcatggggtttgtaaa
aagtgctacggccgcaacctggcaaccggacaagaggttgaagttggtgaagcagtaggt
atcatcgctgcccaatccatcggtgaaccaggtacacagttaacaatgcgtacgttccat
accggtggggtagcaggagacgatatcactcaaggtttaccgcgtatccaggaaatcttc
gaagcgcgtaaccctaaaggtcaggcagtcatttctgaaattgatggtgtggtagttggc
atcaatgaaggccgtgaccgccagcatgagattgttgttcagggtgaagtggagtccaag
acgtatacagcaccttatacagcccgcttaaaagtagctgtaaacgatgaagtagtacgt
ggacaggaattgactgaaggttctattgaccctaaagagttaattaaagtaaaagatgta
acagctgttcaagaatacttgctgcgtgaagttcagaaggtataccgcatgcagggtgtt
gaaattggcgataagcacatcgaggtaatggtacgccagatgcttcgcaaagtgcgtgta
attgatgcagcagaaacagatgtactgccaggtactctgcttgatatccatcaatttaca
gatgccaacgaaaaagcccttcttgctggcaaaatgcctgccacaggacgtccggttctc
cttggtatcacaaaagcatctcttgaaacagattcattcttatcagcagcatccttccag
gagacgacaagagttcttaccgatgcagcgattaaaggcaagcgcgatgagcttcttggc
ctgaaagagaatgtaattattggtaagcttgtccctgccggaacaggaatgcagcgctat
agaagagcagagccttatacaaatgaggaaactgctgaaaatactgttactgtagaataa
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