KEGG   Cytobacillus pseudoceanisediminis: M5V91_23235
Entry
M5V91_23235       CDS       T09231                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
cpss  Cytobacillus pseudoceanisediminis
Pathway
cpss03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpss00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M5V91_23235 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpss03021]
    M5V91_23235 (rho)
   03019 Messenger RNA biogenesis [BR:cpss03019]
    M5V91_23235 (rho)
Transcription machinery [BR:cpss03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     M5V91_23235 (rho)
Messenger RNA biogenesis [BR:cpss03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     M5V91_23235 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N S1CSD-TOTE-2 OB_RNB AAA_22 AAA ATPase_2 NACHT AAA_25 DUF6417
Other DBs
NCBI-ProteinID: UQX53606
LinkDB
Position
4361440..4362705
AA seq 421 aa
MGLNISSLENMKLKELYELAREYKVSYYSKLSKKELIFAILKARAEQEGYFFMEGVLEII
QSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAV
NGDDPESAKERVHFPGLTPLYPNRHMKLETGTRQLSTRIMDLLAPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPEAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR
SGTRKEELLIQKDHLDKLWAIRKSMSDSPDFAEKLLRKLRQTKSNEEFFANLAEEMKAKR
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgggtttaaacatttcaagtttagaaaatatgaagctgaaagagctttatgaacttgcc
cgtgaatataaagtttcttattacagcaagttatcgaaaaaagaattgatttttgccatc
ctgaaagcaagagcagagcaggaaggctactttttcatggaaggtgtcctggagatcatt
cagtcagaaggattcggcttccttcgtccaatcaattattcaccaagctctgaggatatt
tatatttccgcttcccagattcgccgtttcgacttgagaaacggagataaggtttcagga
aaagtccgtcctccaaaagaaaatgagcgttatttcggccttttgcaagttgaagccgta
aatggcgatgatccggaatcagcaaaagagcgtgttcacttccctggtctgactccttta
tatccaaaccgccatatgaaactggaaacaggtacaagacagctgtctacaagaattatg
gacctgcttgcaccggttggattcgggcagcgcggtctgattgtcgcgccgccaaaagca
ggtaagaccatgctgttaaaagaaattgccaatagcattacaaccaaccacccggaagcg
gaactgattgttttattaattgacgagcgcccggaagaggtaacagacatcgagcgttca
gttgcaggcgatgtggtcagctctacatttgatgaagtgcctgaaaaccatattaaagtg
gccgagctcgttcttgaacgcgctatgcgcctggttgagcacaagcgtgatgttgttatt
ttgatggacagcattacaagactggcaagagcgtataacctggttattcctccaagcgga
agaacactttccggcggtattgacccggctgcattccaccgtccgaagcgtttcttcggt
gcagcgcgtaacattgaagagggcggaagcttgacgattttggcaactgcactcgttgac
acgggttcacgcatggatgacgttatttacgaagaatttaaggggacaggcaatatggag
ctgcaccttgaccgctccttggctgaaagaagaatcttcccggccatcgacatccgccga
tccggaacgcgcaaagaagaacttcttatacagaaagatcatctggacaagctgtgggca
atccgcaaatccatgtccgattcaccggattttgctgaaaaactgcttcgcaagctaaga
cagacaaaatcgaacgaagagttttttgctaacttggcagaagaaatgaaggctaagcgt
tcttaa

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