Cytobacillus pseudoceanisediminis: M5V91_27445
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Entry
M5V91_27445 CDS
T09231
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpss
Cytobacillus pseudoceanisediminis
Pathway
cpss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5V91_27445 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpss03019
]
M5V91_27445 (recQ)
03400 DNA repair and recombination proteins [BR:
cpss03400
]
M5V91_27445 (recQ)
Enzymes [BR:
cpss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M5V91_27445 (recQ)
Messenger RNA biogenesis [BR:
cpss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M5V91_27445 (recQ)
DNA repair and recombination proteins [BR:
cpss03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M5V91_27445 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
HTH_38
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UQX54251
LinkDB
All DBs
Position
5211680..5213821
Genome browser
AA seq
713 aa
AA seq
DB search
MLAQAENYLKKYFGYTSFRPGQQDIIQNILSQNNTLGILPTGGGKSICFQIPALVLPGTA
IVISPLISLMKDQVDALSLAGIPAAFINSTLSSAEYQHVMAGIRNGEYKLVYVAPERFGS
MAFLELLNDISISAIVFDEAHCISQWGHDFRPSYRSVVEELNSLYQKPVIAALTATATRD
VAEDIRRLLNIGEEHTFITGFARENLSFHVLKGVNKRDFILQTIKKHKNEAGIIYTSSRK
ETDQLYQFLKSKNCSAAKYHAGLKEEERKEAQNSFVYDESDIMIATNAFGMGIDKSNVRF
VIHYNLPRNIEAYYQEAGRAGRDGVDSTCYLLFAPQDIQLQKFLIEESSLNQQKMEQEYS
KLKDMVNYCHTEKCLQSYIIEYFDENADPIRCGKCSSCLDERTSMDITQEALMIFSCIKR
MGERFGITLTAQVLKGSNNKRIREMNFNKLSTFGLLKNRKEKEIADMINYLLAEDYLALT
DGKYPTVRLSASAVPVLKGQKRLFMKISEPVPVQETDENIELFEMLRKLRKKFADEENVP
PFVVFADASLKEMSRYFPVSKEMMLNIKGVGQMKYEKYGEDFIQAIREFAEEHNISPNPA
AEAPSKTEEPIDDRPSYLISFDYYKDGDSIREIAKKRNFSPITIQEHIFRSVREGNVIDW
SEIFNETEEKLVLQAAEKAGRDKLKPIKEELPEEIDYFKIKAVLVKDELQKQI
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
ttgctggcacaagccgaaaactatctgaaaaaatattttggatatacctctttccgccct
ggccaacaggatattattcaaaatatcctttctcaaaacaatactcttggcattctccca
actggaggcggaaagtcaatctgcttccaaatacccgctcttgtactccccggaacggcc
attgtgatctctcccttaatttccctgatgaaagatcaagtagatgctcttagccttgcc
ggcatcccggctgcttttatcaacagcacgctgtcttcagctgagtatcagcatgttatg
gccggaatacgcaatggtgaatataagctcgtgtatgtggcgccggaacgatttggttcc
atggcctttttggaattattaaacgatatttcaattagtgctatcgtctttgatgaggcg
cactgcatctctcaatggggacatgatttcagaccaagttatcgttccgttgtcgaagag
ctaaacagcctgtaccagaaacctgtaatcgctgctttgacagcaacagcaacacgtgac
gtcgcagaggatattcgcaggcttttaaacataggagaggaacatacgtttattaccggt
tttgcaagggagaatttatctttccacgttttgaaaggtgttaacaaaagggactttata
ttgcagaccataaagaaacataaaaacgaagcgggaattatatatacttcaagccgcaag
gaaacggaccagctgtaccaatttttaaaaagcaagaactgctcagctgccaagtatcat
gcaggcttaaaggaagaagaacgaaaagaagcacagaattcctttgtatacgatgaatca
gacattatgatcgccacgaatgcttttggaatggggattgataaatccaatgtcagattt
gtcatccactataatcttccgcggaacattgaagcctattatcaggaagcggggagggct
ggcagagatggcgtggatagtacatgctacctgctgtttgcccctcaggatatccagctg
cagaagtttttgatagaggagagcagtctgaatcaacaaaaaatggagcaggaatacagc
aagctaaaggatatggtgaattactgccatacagaaaaatgtctccagtcctatatcatt
gaatattttgatgaaaatgccgatcctattcgatgcggcaaatgcagcagctgtctggat
gaacggacaagcatggatattactcaggaagcattaatgattttctcatgcattaagcgg
atgggagaaagatttggcattactttgacagcccaggttttaaaaggctccaataataag
agaatccgcgaaatgaattttaataaactttcaacatttggattgctgaaaaaccgcaaa
gaaaaagagattgctgatatgataaactatcttctggccgaggactatctggctttaaca
gatgggaaatatccaacagtaaggctgtcagccagtgcggttcccgtgttgaaggggcag
aaaagattatttatgaaaataagcgaaccggtgcctgttcaggaaacagatgaaaacatt
gagctcttcgagatgctgagaaagctcaggaaaaagtttgcagatgaggaaaatgtccct
cctttcgtagtatttgctgatgcatcattaaaagaaatgagccggtattttccagtcagc
aaggaaatgatgttaaatattaaaggtgtagggcaaatgaagtatgaaaagtatggggaa
gactttatccaggctatcagagagtttgccgaagaacataatatttcgcctaatccggct
gcagaagcaccttcaaaaacagaggaaccaatagatgatcgcccaagctacctgatttcc
tttgactattacaaggatggagattcaataagagaaatagccaaaaagcgaaatttctca
ccgataacaattcaagagcatatatttcgctctgtcagagaaggcaatgtaattgactgg
tcagaaatattcaatgaaactgaagaaaagctcgttttacaggctgctgaaaaagctgga
agagacaaacttaaaccaatcaaagaagaacttccggaagaaatagattattttaaaatc
aaagccgtcctggtaaaagatgaactgcagaaacaaatatga
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