Chlamydia psittaci WS/RT/E30: B601_0938
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Entry
B601_0938 CDS
T02314
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpst
Chlamydia psittaci WS/RT/E30
Pathway
cpst03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B601_0938 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpst03400
]
B601_0938 (mfd)
Enzymes [BR:
cpst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B601_0938 (mfd)
DNA repair and recombination proteins [BR:
cpst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B601_0938 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
ADDB_N
AAA_19
PhoH
Motif
Other DBs
NCBI-ProteinID:
AFS23461
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All DBs
Position
972454..975807
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AA seq
1117 aa
AA seq
DB search
MDFDPVNLNLSILPEITNTSVPLLIENILPGARSFLAAKFFYERKESVVMIATRSRIDDL
FEDLSSFLGFPPVEFPSSEIDLSPKLVNIDAVGKRDKVLYDLYQKKAPIFCVTTLKALLE
KTRSPKDTAHQHLDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDIFPLS
SPEPFRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPATKDSGTEVLSHCLLDYFDTPP
AFLFDNLTLLEDDFSEISGTLSSLPNRFLPIQDLCRRAFQSQTIFFEEKNFPNVRTIKNT
QVNIEVFHCDIQASRLVAPFIYPNEVIDEQENPLLGFLQKLQEYIPNKGQPFNVALYNTK
AKSLKEARALIETLSQSSIHIYEKPGNLSSSFALVNERFAAISLAEFASTKVLRRQKQRN
YFSVTTEEVFVPIPGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVPSD
QAYLISRYVGVSDKTPDLHNLNGSKWKRSRDLSEKSLILYAEKLLQLEAQRSTTPSFIYP
PHGEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVK
AVCDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGN
IDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTL
YMSLSGARDLSLITMPPLDRLPVSTFVLEHNEETLSAALRHELLRGGQAYVIHNRIESIF
RLGNTIRNLVPEARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDIPNANTI
LVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGGGMK
IALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNSSPLLFNDDVKIEFP
YKSRIPDTYIDLASLRIEFYQKIGGAEDAEQLDLIKEEMRDRFGPLPEEVLWLFALAHVR
LFALQHNISSIKGTGNALYIQQCHGKTEQIKKTLPYSLSPTPELLVAEVLESIEKAFPLK
NPSLRRLNVEILRRDKTPSLTSTCMVFTASRQIHASI
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacccagttaatttaaacctatctattttacctgaaataactaacacctct
gttccattactaatagaaaatatccttcctggggctcgtagtttcttagctgctaagttt
ttctacgagaggaaagagtctgtggtaatgattgccacgcgctctcgtattgatgatctc
tttgaagatctttcttcatttttaggattccctcctgtggagtttccttcatcagaaata
gacttatctccaaagcttgttaatatcgatgctgttgggaaacgtgataaggttctttac
gatttgtatcagaaaaaagcccctatattttgtgtaacaacactaaaagctttactagag
aaaactcgatcaccaaaagatacagctcaccaacatttagatatccaagttggagatgtt
cttgatcctgatatcatgatcgatctatgtaaaaatttaggttatcgccatgaaactctt
gccagcgataagggagagtttgcttatagaggagggattattgatatctttcctctatct
tctccagaacctttccggatagagttttggggagaaaagatcatctcaatacgtcctttt
aatccatctgatcaactctcaacagggaaagtttccaagctgtctatatccccagccaca
aaagattcggggacagaagttttatcacactgcctattggattattttgatacaccccca
gcatttctcttcgataatttaaccttgttagaagatgatttctcggagatttcagggacg
ttgtcttcgctacctaaccgttttctacctatccaagatttatgtcgacgtgcttttcaa
tctcagacgattttctttgaagagaaaaacttccctaatgttcgtacaattaaaaatacc
caagtaaacattgaagtcttccactgcgacattcaagcttcccgacttgttgctcctttt
atctatcctaacgaagttatcgacgaacaagaaaatccccttcttggttttctacaaaag
cttcaagaatatatccctaacaaaggacaaccgtttaacgtagccctctacaatacaaaa
gcaaaatctttaaaagaagctcgggctctaatagaaacgctaagccagagctctatacat
atctatgaaaaacctgggaatctctcttctagctttgctcttgtaaacgaaagatttgct
gctatttccctagcggaatttgcttctacaaaagtattgcgaaggcaaaaacagagaaat
tatttttccgtaactactgaagaagtattcgttcctattcctggagagacagttgttcat
ttacacaatggtattggcaaatttatcggaatggaaaagaagccaaaccatttaaatatt
gaaactgactatctagttcttgaatatgccgacaaagcacggctgtatgtgccttcagac
caagcctatctgatttcacgttacgtaggagtttctgacaaaactcctgaccttcataat
ctaaatggctctaaatggaaacgatctcgagatctctctgaaaagtctcttatattatat
gctgagaaactccttcagctcgaagcacagcgttccacgactccttcatttatttatcct
ccccatggagaagaggtaattaaattcgaagagagctttccttatgaagaaactccagat
caattaaaagcgattgagcaaatctattccgatatgatgtccgataagctcatggaccgt
ttaatttgcggtgatgcaggattcggaaagacggaagtcattatgcgagctgctgtgaaa
gcggtttgtgatggtcagcgacaggttattgttatggtccccacaaccattctagcaaat
cagcattacgaaactttcacccaacgtatggcagggttaccgataaatattgctgttctt
tcgcgcttttctgaagggaaggctctgaaaaaaatctttgaggatacagctcaaggcaat
attgatattttaatcggcacacacaagttaataaataaaaacttagaattcaaaaatcct
ggtttattgattattgatgaggaacaacgttttggtgttaaagttaaagatttcctcaag
gaacgttaccctacgatagactgtctcacagtatcagctacacctattccgagaacatta
tacatgtctttgtcgggagccagggacctctctttgattaccatgcctccattagataga
ctgcctgtttctacttttgttttagaacacaatgaagaaactctatctgcagccttacgg
cacgaattattgcgaggtggtcaagcatacgtaattcataatcgtattgagagcattttt
agattagggaatacaatacggaacttggtaccagaagcacgtattgctgttgctcatggc
caaatgtcttcagatgagttagcttctatttttcaaaaatttaaggatcaagaaaccaat
gtccttgtagcaacagcacttatagaaaatggtatcgatattcctaatgccaatacgatt
ttagtcgaccaagcagataaatttggcatggctgatctgtatcagatgaaaggtcgtgta
ggaagatggaatagaaaagcttactgttattttttagtttcccatttagatagattatct
ggtcctgctgcaaaacgtttacaagctttgaataaacaagaatatggaggaggaatgaag
atcgctctccatgatttagaaattcgtggcgcaggaaatattttaggaaccgatcaatcc
gggcatatcagtgcgattggattcaacctctactgtaagttattgaaaaaaacggttgct
gctttaaagaacaactcttctcctttattattcaacgatgatgtaaaaatagagtttcct
tataaatcccgcatacctgatacctatatagatttggcgtctctgcgtatagaattttac
cagaaaatcggtggtgctgaagatgccgaacagttagatttgataaaagaagagatgcgc
gatcgcttcgggcctctacccgaagaggtcttatggttatttgcattagctcacgtacgt
ctatttgctctacaacacaatatttctagcattaaaggtacggggaatgctttgtatatt
caacaatgtcatggaaaaaccgagcaaataaagaaaacattaccctattctttatctccc
accccagaactcctggtagctgaagtgttagaatctatagagaaagcatttcctctaaaa
aacccctcgttaaggaggctcaatgtcgaaattttacgacgtgataaaaccccaagcctc
acgtccacctgtatggtttttacggcaagtaggcagatacatgcctcaatatag
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