Corynebacterium pseudotuberculosis CS_10: CPTB_01959
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Entry
CPTB_01959 CDS
T03483
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cpsu
Corynebacterium pseudotuberculosis CS_10
Brite
KEGG Orthology (KO) [BR:
cpsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsu03019
]
CPTB_01959
Enzymes [BR:
cpsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CPTB_01959
Messenger RNA biogenesis [BR:
cpsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CPTB_01959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_11
nSTAND3
ResIII
AAA_30
NACHT
HA2_N
SLFN-g3_helicase
T2SSE
PhoH
TsaE
AAA_16
ABC_tran
AAA_23
AAA_25
Tc-38
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AIG10015
LinkDB
All DBs
Position
complement(2036750..2040664)
Genome browser
AA seq
1304 aa
AA seq
DB search
MANFSRTDTELRSTKESLRAQLSQVSIAEERVFLRRILKASSKSAITAISADIQQAQIAL
SQKAALIPSITFPENLPVSSQRDAIAQAITNNQVVIIAGETGSGKTTQIPKICLELGRGV
RGLIGHTQPRRLAARTVAERIAEELDQKIGSSVGYAIRFDDRVSASTSIKLMTDGILLAE
MQRDRFLNAYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFAQHF
ANANGEPAPIIEVSGRTYPVEILYRPLEIPDGEKLIDVDPIDGLIQAIQELMGYGPGDIL
CFFAGEADIREAMDAIEAKRWKNVEVTPLFGRLSNQEQHRVFSPHSGRRIVLATNIAETS
LTVPGIHFVVDTGTARISRYSTRTKVQRLPIEPISQASANQRSGRCGRVTDGIAIRLYSQ
QDFESRPEFTDPEILRTNLASVILRMASLKLGDIENFPFIQAPDTRAIRDGFLLLKELGA
LADSAKTNSPLLTTVGRTLAKIPLDPRLARMLIAAEEFGCLREAYIVVAALSIQDVRERP
LEKQSQADQLHARFKDTSSDFLSYLKLWEYISEKRTELSGNAFRRTMQSEFLHYMRIREW
SDLIRQLRSIGEQIGWTNPDDIAGHLIPDNLHKALLAGLLSHIGLRDGDSKEFIGSRNSR
FLVFPGSSLAKRPPQFLMAAELVETSRLWARNVAEIDPAWVEHIGKNLLKHNYSEPYWST
KRVAAMVHQRSTLYGVPIIADRPVGYASIDPRAARDMFIREALVNGNWTTHHKFYRRNAE
KLLSAAQIEEKIRRRDVVIDEDALYNFYDSRLPDHITTGRSFDRWWKTAVHKTPHLLDFD
LEKLRRGESANVNEEDFLDIWRRGSLEFGLTYHFDPSAEDDGVTVLVPVPLLGGLDADGF
EWLVPGLLEDLVTELIRSLPKHLRKTVVPAPDFAHKITTMLNYRDGFLYQRIAECLSELG
RPGISADDFNPNTLPKHLKITFAAVDKRGRIIDRDKSLDSLKSRRSEQIRASVSRVSHAV
EQSSAKEWTPQSLGTISQEVTTKVDGQLVTTYPALVVTPEGISVKAMPTKREADISMFTA
TLTLLLKATPVNTQKMLNGLPLQQRVAIENYPHGGATGFVNDAQVAVVRDLIIANGGAVR
SPEEFSKLQTIIKPLVPSKVRAIVVELAPGINSYLRVKSEINKWTGPAIDDINNQLNFLL
PPRAISQHGAHRLKHLPRYVQAITLRLEDMERMPDRDADRQLLVNRLERGLAQKIQKSGQ
GKSAHQVRDIQWLIQELRVSLFAQRLGTTQSVSERKIAKAIEQL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaacttctctcgaacagataccgagctacgctcaacaaaagaatctcttcgcgca
caacttagccaggtcagtatcgctgaggaacgagtcttccttcgtcgtattctcaaagcc
tcttctaagagcgcaatcacagctatctccgcagatatccaacaggctcagatagcgtta
tcgcagaaagcagcgctcattccctctattacttttcctgagaatctcccggtctccagc
caacgcgacgctatcgcacaagccattaccaacaatcaggttgtgattattgctggagaa
acaggatcaggaaaaaccacccagatacccaaaatctgtttagagctaggtcgcggggta
cgtggattaatcggacatacgcaaccgcgtcgactcgcggcacgcactgttgccgagcgt
atagccgaagaacttgaccaaaaaatcggttcttcagtggggtatgccatccgctttgat
gaccgtgtttctgcttctacatccatcaagctgatgactgacggcatcctgctcgcagaa
atgcagcgggatcgattccttaacgcttatgacacgataattatcgacgaagcccacgag
cgcagcctcaacatcgattttattcttggatacctcaaacagcttcttccgcgccgtcct
gatcttaaagtcatcattacttctgccacgattgacccagagcggtttgcgcagcacttt
gccaacgcaaacggtgaacctgcgcccattattgaggtctccggacgtacgtaccctgtt
gaaatcctttatcgtccgcttgaaatccccgatggggaaaagcttatagacgtagatccc
attgatgggctcatccaagccatccaagagcttatgggatatggtcccggcgatattctt
tgtttctttgctggcgaagcagatatccgcgaagcgatggatgctatcgaagccaaacgg
tggaaaaacgtagaggtcacacccctctttgggcgtctctccaaccaagaacagcatcga
gtcttttccccacattccgggcgccgaattgttttggctactaacatcgcggaaacctcg
ctgactgttccgggtattcattttgtcgtggacaccggaacagcccgtatttcaagatat
tccacccggaccaaagtccagcgtcttcctatcgagcctatctctcaagcaagcgctaac
cagagatcaggacgctgtggtcgtgttacagacggcatagcaattaggttgtactcccag
caagactttgaatctcggccagaatttactgatccagagattttacgaacaaacttggcc
agcgtcattctccggatggcttccctcaaattgggagacattgaaaattttccttttata
caagcacccgataccagagctatccgtgacggatttttactgctcaaggagctaggagcc
cttgcagattcagccaaaacaaactccccactcctcactacagtcggccgtactctggcc
aagatacctttggaccctcgtttagctcgcatgctgatcgcggcagaagaatttggttgt
ttaagagaagcctacatagtggtggctgcgctgagtattcaggatgttcgcgagcgtccg
ctagaaaaacaaagtcaagctgatcagctccacgcacgttttaaagacacaagcagcgat
tttcttagctaccttaaactttgggaatacatatcagaaaaacgcaccgagctttctggt
aatgcttttcgacgtaccatgcagtccgaattcttacactacatgcgcattagggaatgg
tcagatcttattcgtcagttacgtagcatcggcgaacaaattggatggaccaacccagat
gacattgcaggtcatctcatcccagataacctgcacaaagctctcctagccggactactg
tctcacatcggtttaagagatggcgattctaaggaattcataggaagcagaaactccagg
tttttggtgtttcctggttcctcattggccaagcgtcccccgcaattccttatggcggca
gagcttgtggaaacttcacggttatgggcgcgtaatgtagcggagatcgatccagcgtgg
gtcgaacatataggtaaaaatctgctcaagcacaattattctgagccgtattggtctaca
aagcgcgtagcagccatggtgcaccaaagatctacgttatacggtgttccgattattgct
gataggccagtcgggtatgcttccatcgatcctcgtgctgctcgcgatatgtttattaga
gaagccctagtcaatggtaattggactactcatcataagttttatcgtcgtaacgcagaa
aaactactctcagctgcgcaaattgaagaaaaaatccgacgtcgcgatgttgtaatcgat
gaagatgctctctataatttctatgattccaggctcccagatcacatcactacaggacgt
tcctttgaccgctggtggaaaacagccgtccataaaacgcctcatcttctagactttgat
ctggaaaaattgcgccgaggtgagtcagcaaacgtcaatgaagaagacttcctcgatatt
tggcgccgaggttctttagaattcggcttaacctaccactttgatcccagcgccgaagat
gacggtgtcactgttcttgttccggtaccattactgggaggactcgatgcagacgggttc
gaatggctagttcctggtttgttagaagatctggttactgagctgatccgttctttacca
aaacacctgcgtaaaaccgttgttcctgcaccagattttgcccataaaatcaccaccatg
ctgaattatcgcgatggtttcctctatcaacgcatcgccgaatgtctatctgaattgggg
cgtcctggaatatctgcggatgattttaacccgaacacactccctaaacacctcaaaata
acattcgctgctgtagataaacgcggacgtatcattgatcgggacaaatcgctcgattcc
ctcaaatcccgacgttctgaacaaatccgagcttcagtttcacgagtgtcccatgccgtc
gagcaatcctctgctaaagaatggacgcctcagtctctaggcactatctcacaagaagtg
actacaaaggtcgatggacagctggttaccacgtatccagccctcgttgttaccccagag
ggtatttcggtcaaagccatgcccactaagcgtgaggccgatatctctatgtttacggcc
acactaacgttgctgcttaaagcaacgcctgtaaatactcagaagatgctcaatggcctc
ccacttcagcaacgagttgctatagaaaactatcctcacggtggggccacaggctttgtc
aacgatgctcaagttgcagttgtaagagacttgatcattgctaacggtggcgctgtgaga
tcaccagaagagttttctaagttacaaacgattattaaaccattagttccgagtaaggta
cgcgcaatagttgtcgagctagcccctggcattaactcttatctccgcgttaaatccgag
ataaacaagtggaccggcccagccatcgacgacattaataatcagctcaattttctcctt
ccaccgcgggcgatatcccaacatggggcacaccgcctcaagcatctcccaaggtacgtg
caagcaatcacgcttcggctcgaagatatggagcgcatgccagaccgggatgcagacagg
cagttactagttaatcgactagagcgaggcttagcacaaaaaatccaaaaatctggacaa
ggaaaatctgctcaccaagtacgtgatattcagtggttgattcaggaattacgtgtcagc
ctttttgcccaacggctagggactacgcaatcagtttctgagagaaaaatcgcaaaagca
atcgaacagctctaa
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