Chlamydia pneumoniae TW-183: CpB0922
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Entry
CpB0922 CDS
T00136
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpt
Chlamydia pneumoniae TW-183
Pathway
cpt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CpB0922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpt03400
]
CpB0922
Enzymes [BR:
cpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CpB0922
DNA repair and recombination proteins [BR:
cpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CpB0922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
RecG_dom3_C
ADDB_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AAP98851
LinkDB
All DBs
Position
complement(1015139..1018396)
Genome browser
AA seq
1085 aa
AA seq
DB search
MAMDFNPVNLDFSISKEFKEETLPLLLENIHPGATAFLAAKMFHDCRASVIMITTPARLD
DLFENLRTFLDQAPVEFPSSEIDLSPKLVNIDAVGKRDHLLYSLNQHRAPIFCVTTLKAL
LEKTRSPQATSQQHLDLAVGDVLDPEATTELCKSLGYSQVMLTSEKGEFSCRGGIVDIFP
LSSPEPFRIEFWGEKIISIRSYNPSDQLSTGKVSKISISPAYTEEASGGNYSHSLLDYFS
TPPLYLFDNLEILEDDFADISGTLSSLPDRFFSIGTLYDRISTSNQVYFSETPFPNVKNL
KENRVIIEAFHRNMEASRQAIPILYPEQIIQNDENPLLAFLQHLQEYMPPHGKPLKLAIY
STKTKSLKEARALAETVARGDVEIYEKTGNLTSSFALVNEAFAAISLSEFASTKVLRRQK
QRTHFSVTTEEVFVPIPGETVVHIHNGIGKFLGIEKKPNHLNIETDYLVLEYADKARLYV
PSNQAYLISRYVGTSDKAADLHHLNSSKWKRSRDLTEKSLIVYAEKLLQLEAQRSTTPAF
VYPPHGESVIKFAETFPYEETPDQLKTIDQIYNDMMSPKLMDRLICGDAGFGKTEVIMRA
AVKAVCDGHRQVIVMVPTTILATQHYETFKERMAGLPIEIAVLSRFSQAKVQKLICEQVA
SGQIDIIIGTHKLINKSLEFKNPGLLIIDEEQRFGVKVKDNLKERYPMIDCLTVSATPIP
RTLHMSLSGARDLSVIAMPPLDRLPVSTFVMEHNTETLTAALRHELLRGGQAYVIHNRIE
SIYTLAETIRNLIPEARIGVAHGQMGAEDLSNIFTKFKNQKTDILVATALIENGIDIPNA
NTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQEYGG
GMKIALHDLEIRGAGNILGTDQSGHIGTIGFNLYCKLLKKAVSALKKHTSPLLFNDDVKI
EFPYNSRIPDTYIETGSMRIEFYQKIGNAESSEELTAIQEEMRDRFGPLPQEICWLFALA
EIRLFALQHGISSIKGTANALYVQKCLSKSEQTKKTLPYALSPTPELLVKEVIESIERGF
LINAS
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggatttcaacccagttaatttagatttttctatttccaaagaattcaaagag
gaaacacttcctttactattagaaaatattcatccaggagccacggcattccttgcagca
aagatgtttcatgactgtcgtgcttctgtaattatgattacgacacccgcacgtcttgat
gatctctttgaaaatttaaggacctttttagaccaagctcctgtagaatttccctcttct
gaaattgatctctctccaaaattagtgaacatagatgctgtggggaagcgagatcatctt
ctttacagcttgaatcagcacagggctcctatattctgtgtcactacattaaaagctctt
ttagaaaaaacccgttctccacaagctacaagtcaacaacatcttgatctcgcagttgga
gatgtcttagatccagaagcaactacggaactctgtaaaagtttaggatattctcaggtc
atgctaactagcgaaaagggagaattttcttgtcgcggaggaattgttgatattttcccg
ttatcctcgccagagccttttaggatagaattttggggagagaagatcatttctatcaga
tcttacaatccttcggatcagctatcgacaggaaaagtctctaaaatttctatctctcca
gcgtacacagaagaggcctctggaggaaactattctcattcactattagactatttcagc
acccctcctctctatctctttgataacttagaaattctagaagatgactttgcggatatt
tctggaacactttcgtcccttccagatagatttttctctattggcactctctacgatcgc
atttcaacgtctaatcaagtttatttctcggagactccgtttcctaacgtcaagaatctc
aaggaaaaccgcgtcatcatcgaagcatttcaccgaaacatggaagcgagtcgccaagcg
attcctatactgtatcctgagcaaattattcagaacgatgagaatcccctacttgctttc
ctacagcatcttcaagaatatatgcctcctcatggaaagcccttaaaattagccatctac
agcacaaaaacgaaatctttaaaagaggcccgtgctctagcagagactgtagctcgtggg
gatgtggaaatctatgaaaaaacagggaatctaacttccagctttgcattagtaaacgaa
gcctttgcagcgatttccctatccgagtttgcttctacaaaagtattgcgtaggcaaaaa
caacgcactcacttttcagtgactactgaagaagtttttgttccgattccaggagagact
gttgtccatattcataatggaattggaaaattcctaggaatagaaaaaaaaccgaaccat
ctgaatattgaaacggattatcttgttttagaatatgcagataaagctcggctttatgtt
ccttcgaaccaagcctatctgatctctcggtatgttgggacttctgataaagctgccgat
ctccatcatttaaatagttcgaaatggaagcgctctagagatcttactgaaaaatctttg
attgtctacgcagagaagctcttacagttagaagcacaacgttcgacaactcctgctttt
gtgtaccctcctcacggagagtccgtaatcaagtttgcggaaacgtttccctatgaagaa
acccccgatcagttaaagactattgatcagatttacaatgacatgatgtctccaaaactc
atggatagattaatttgcggagatgctggctttgggaaaactgaagtcatcatgcgggct
gctgtcaaggctgtttgcgatggccatcgacaagtcattgttatggttcccacaacgatt
ttagcaactcagcactatgaaacttttaaagaaagaatggcgggattgccgatcgaaatt
gctgtgctttcacgtttctcccaagccaaagtgcaaaaactcatctgtgagcaagtagct
tcaggacaaattgacattatcattggaactcacaaactcattaacaaaagcctagagttt
aagaaccctggtttattaattattgatgaagaacaacgctttggagttaaagttaaggac
aatctgaaggagcgctatcccatgattgactgtcttacagtatctgcgactcccatccca
aggacattgcacatgtctctatcaggagctcgtgatctatctgtgattgccatgcctccc
ttggataggttgcctgtaagtacttttgtcatggagcataatacagaaacattgacagcg
gctttaaggcacgagctccttcgaggaggacaagcctatgtcattcataatcggattgag
agcatctatactcttgctgagaccattcgcaatctgattcctgaggctcgtattggcgta
gctcatggtcaaatgggagctgaggacctctctaatatctttacgaaattcaaaaatcag
aaaaccgacatcctcgttgctactgcactgatagaaaacgggattgatattccaaacgcc
aataccattttgatagatcatgccgataagtttggaatggcggatttatatcaaatgaag
ggacgtgtcgggcgatggaataaaaaggcctattgttattttctagttcctcacttagac
aggttgtctgggccagcagcgaagcgactcgctgctttaaataagcaggaatatggaggg
ggaatgaagattgccctccatgatttagaaatccgcggtgcagggaatattctaggaacc
gatcagtcgggacatatcggaactatagggtttaatttgtattgcaaattactaaaaaaa
gctgtttcagctttaaaaaaacacacgtcccccctacttttcaacgacgatgtgaaaata
gaatttccttacaattcgcgtattcctgatacttacatcgaaactggatcgatgcgcatt
gagttttaccaaaagattggtaatgctgaaagctctgaagagcttaccgcaatacaagaa
gaaatgcgagatcgctttggcccattacctcaagagatctgctggctttttgcccttgct
gaaatacgcctatttgctttgcagcatggcatttctagcattaagggaactgcgaatgct
ttatatgtgcaaaaatgccttagcaaatctgaacagacaaagaaaaccttgccctatgct
ctatctccaactcctgaacttctagtcaaagaagtcattgagtccatagaaaggggcttc
ttaatcaacgcttcataa
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