Chiloscyllium punctatum (brownbanded bambooshark): 140455121
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Entry
140455121 CDS
T11285
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140455121 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpun03041
]
140455121 (dhx16)
Enzymes [BR:
cpun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140455121 (dhx16)
Spliceosome [BR:
cpun03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140455121 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
PWI
Motif
Other DBs
NCBI-GeneID:
140455121
NCBI-ProteinID:
XP_072405879
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All DBs
Position
30:1888862..1936647
Genome browser
AA seq
1037 aa
AA seq
DB search
MGSLEKWVNDELHQLLGLSDKYVAQFLIGTAQRSDSVADFIRRLEDTGTIDITQGVRRFA
DELWTKIPRTQKAEKAARAVEREALAMQQKNRTYLLLEDSEDSGPEEKQSHSKGKRGKRK
HIRKKRAASSESDSDHKMKRNPSPQKLSGSEEEEWEKEEKDRLKDLEERDAFAERIKQRD
KDRTRNILERSDKKAYEEAQKRLKMGEEDRRAMIPELRKRSRRDYLGKREQEKLEDLEAE
ILDDEYLFSATDLSNREKQQLDYKKKVRDLAREYKAAGEQEKQEQSNRYYMPEESRSKKV
PDRYEEPKADDKHAPRDEQRRWEEEHMDAALLKFGARDARERNQQKEYEFVLEEDEMIDF
VTTVTMQGTVSKDEKAEMSEAEKQKMTLQEVRRSLPVFPYRQDLLAAIAEHQILIIEGET
GSGKTTQIPQYLYEEGYTAGGMKIGCTQPRRVAAMSVAARVAQEIGVKLGNEVGYSIRFE
DCTSERTVLKYMTDGMLLREFLTEPDLAGYSVVIIDEAHERTLHTDILFGLIKDISRFRP
DLKVLIASATLDTEKFSTFFDEAPIFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHV
TQAPGDILVFLTGQEEIETTCEMLQERCRRLGSKIAELLVLPIYANLPSDMQAKIFEPTP
AGARKVVIATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTPCSKASANQRAG
RAGRVAAGKCFRLYTAWAFKHEMEETSIPEIQRTNLGNVVLLLKSLGINDLIHFDFMDPP
PHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASERYQCSEEILTIA
AMLSVNNAIFYRPKDKVVHADNARMNFFLPGGDHLVLLNVYTQWVESGYSTQWCYENFIQ
FRSMRRARDVRDQLEGLMERIEVEMKSSAGDNVLIRKAITAGFFYHTARLTRTGYKTVKH
QQAVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWLLEVAPHYYKSKELQDA
ASKKMPKKVGKTREELG
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgggctcattggagaagtgggtgaacgatgagcttcaccagctgctgggcctgagcgat
aagtacgtggcacagttcctgattggcactgcccagcgcagcgacagcgtggcagacttt
atccggcgcctggaggacacggggaccattgacatcacacagggagtccgacgtttcgca
gatgagctctggacgaagatccccaggacgcagaaggctgagaaggcagcgcgtgccgtc
gagcgagaggccctcgccatgcaacagaagaaccggacttacctgttactggaggacagc
gaggacagcgggcccgaagagaagcagagccacagtaaaggcaaacgggggaaacggaaa
cacatccggaaaaagagggcagcctcgtcggagagtgactccgaccacaaaatgaaaagg
aacccgtcgccacagaaactgtcgggatctgaagaagaagaatgggaaaaggaggagaag
gatcgcttgaaagatctggaggagcgagatgctttcgccgagcgtatcaagcaacgggac
aaggacaggacccgaaatatcctggagcgctctgataagaaggcctacgaggaagctcag
aaacgtctgaagatgggcgaggaagaccggcgggcaatgatcccggagctgcgcaagagg
tcccggagagattacctgggcaagcgagagcaggagaagctggaggacctggaggcggaa
atcctggacgacgagtacctgttctccgcgactgacctcagcaaccgggagaagcagcag
ctggactacaagaagaaagtgcgcgacctggcacgggagtacaaagcagccggagagcag
gagaagcaggagcagagcaaccgctattacatgcccgaggagtcccgcagcaagaaagtt
ccggatcgctacgaggagcccaaggcggatgacaaacatgcccctcgggacgagcagagg
cgttgggaggaggagcacatggacgcggcgctgttaaaattcggggcccgggacgccagg
gagcgcaaccagcagaaggagtacgagtttgtgctggaggaggacgagatgattgacttt
gtgaccaccgtcaccatgcagggaaccgtgtctaaggatgaaaaggcagaaatgtcggag
gcagagaagcagaaaatgactctccaggaggtgaggaggagcctacctgtcttcccctac
cgtcaggacctgctggcagctatcgctgagcaccagatcctcatcatcgagggcgagacg
ggctctggcaaaacaacccagatcccccagtatctgtacgaggagggctacacggctggg
gggatgaagatcgggtgcacgcagcctcggcgcgtggcagccatgagcgtggccgcccga
gtggcgcaggagatcggggtcaagctgggaaatgaggttggctacagtatccggtttgaa
gactgcacctcggagcggacggtgctaaagtacatgacagatggaatgctgctgagggaa
ttcctcacggagccagacttggctggatatagcgtggtgatcattgacgaagcccacgag
cgcacacttcacactgacattctcttcgggctgattaaagacatctcccgcttccgccct
gacctgaaggtcctgattgcgagcgccacgctggacactgagaagttctcgacgtttttc
gacgaggctccgatctttcgtatcccggggcgacggttccccgttgatatttactacacc
aaggcccctgaagcggactatctggaagcctgcgtggtttctgtcctgcagattcacgtc
actcaagctcctggcgacattctggtgttcctcaccggtcaggaggaaatcgagaccacg
tgcgagatgttgcaggagcgatgccgtcgcctgggctccaagattgccgagctgctggtt
ctacccatttacgccaacctcccctccgacatgcaggccaagatctttgagcccacccca
gcaggtgccaggaaggttgtcatcgccaccaacatcgcggagacctccctgaccatcgat
gggatcatctatgtgatcgaccccggtttctgcaagcagaagagttacaatgcacgcaca
ggcatggagtctctcattgtcacaccctgctccaaggcctcagctaaccagcgagctggc
agggctggccgcgtggctgccgggaagtgcttccgcctctacacagcctgggccttcaag
cacgaaatggaggaaacgtccatcccggaaatacagcgaacaaacctgggcaacgtggtg
ctgctgctgaagagtttaggaatcaacgacctgatccactttgatttcatggacccccct
cctcacgagaccctagtgctggccttggagcagctgtacgccctgggggctctgaaccac
ctcggagagctgaccaagctcggtcgcaggatggcagaactccctgtggaccccatgctg
tccaaaatgatcctggcctctgagaggtaccagtgctctgaggagatcctaaccatcgca
gccatgctgtcggtcaacaacgccatcttctaccggcccaaagacaaggtggtgcatgct
gacaatgctcgcatgaacttcttcctgcctggaggggatcatctggtcctgctcaacgtc
tatacacagtgggtagaaagcggctactccacgcagtggtgctatgagaatttcattcag
ttccggtcgatgcggagagccagggacgtgcgggaccagttggagggtctgatggagagg
attgaagtggaaatgaaatcatctgcgggcgataacgtcctcatccgcaaggccatcacc
gctggcttcttttaccacaccgcccggctcactcgcactggctacaagacggtgaagcac
cagcaggcagtctacgtccaccccaacagcagcctgtttgaggagcagccccgctggctc
atctaccacgagctggtcttcaccacaaaggagttcatgagacaggtgatcgagatcgac
agtgggtggctgctggaggtggccccgcattactacaaatccaaggagctgcaggatgcg
gccagcaagaagatgcccaagaaagtgggcaagacccgggaggagctcggctga
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