Chiloscyllium punctatum (brownbanded bambooshark): 140455337
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Entry
140455337 CDS
T11285
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140455337 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140455337 (skic2)
Enzymes [BR:
cpun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140455337 (skic2)
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140455337 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
140455337 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_beta-barrel
DUF3516
ATPase_2
Motif
Other DBs
NCBI-GeneID:
140455337
NCBI-ProteinID:
XP_072406217
LinkDB
All DBs
Position
30:27385061..27440535
Genome browser
AA seq
1247 aa
AA seq
DB search
MDQERIEVPPKDPLDLPLSILEVGCSGKFELITEPARKNGYIFPLATLPHGLPPYALDLI
TEAEQRFLSDPSFLPLHHFENSQKVWPREVCVDSLYHVDVTPVHSTLKVERNQTTGELLG
YKEVLLDDMGLSTKNSLSLQRPPGPPSQSVRGSSTNYPFWPGGLDEPSLDTIKSKGELEE
DIDFGKDLLTVPPGWKRGMDFKKKEHKVTPGLLNLSNLIGAMDDFNLGGSSDEEDEKKAK
ATETKRPFHRTNSLEDLVLQELKVTPQPDQSEQKEERSIPEKEQWAVPVDISTPVDDFYK
RIPDPAFKWPFEPDVFQKQAILRLETHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIY
TSPIKALSNQKFRDFKNTFKDVGLLTGDVQLHPEASCLIMTTEILRSMLYNGSDVIRDLE
WVIFDEVHYVNDVERGVVWEEVLIMLPDHVNLILLSATVPNTLEFADWIGRIKQKKIYVI
STMKRPVPLEHHLYTGNSQKTQNELFLLLDAQGNFLTKAYYAAVDAKKERSSKHSQSFGA
KQPVYHGGSSQDKSVWLSLIDMLRKKDSLPIVAFTFSRNRCDENANMLTTVDLTSTVEKS
EIHIFFQKCISRLKGTDRELPQVLQMVELLKRGIGVHHSGILPILKEVIEMLFTRGLVKI
LFATETFAMGVNMPARTVVFDTIRKHDGTNFRDLTPGEYIQMAGRAGRRGLDTTGMVIIL
CKSGVHEMADLHKMMLGKPTLLQSQFRLTYTMILNLLRVEALRVEDMMKRSFSEFHTRKD
AKMYEQQIQELAKKLSNMDEVECVGQLSDLEHYYNTVRELLYTRNTLQKSIMESTSAFKA
LSVGRVLVVKNQCHKNALGVILQVCTDSSNRSFTTLVLSEPRQEDTGKDVEELPVTPTPD
YLLANKLFLPEGPCGHVVEKLTAKDIGSITVKTLRINADKIIDDYKKRQIPRFRNDPPGP
SVTTATQELLRLVEAHPDGLAGLDPIGDLQLKDLDLVDSYTRARRLEDSLSTFTCVHSPR
FSTEYTRMHERMMIKDELERLRFLVSDRSLMLLPEYEQRVNVLKALKYIDESCAVQLKGR
VACEISNHELIVTEMVFENVLTDLRPEEIVALLSCLVFQQKTQVEPELNEVLRKGIERIR
GVAERIATLQRECSLRESVEDYVEQFKFGLVEVVYEWAQGLPFAEITRLTDVQEGIIVRC
IQRLNETCRDVRNAARIIGDPTLNAKMEQASNLIKRDIVFAASLYTQ
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggaaagaattgaagtgcctccaaaggatccccttgaccttcctttgtccatc
ttggaagtgggctgctcaggaaagtttgagttaatcacagagcctgcgagaaagaatggg
tacatcttccccttagcgacgcttcctcatggcttgccaccatacgccttggacctcatc
actgaggcagagcagcgcttcctgtccgacccctcgtttctccccctccatcactttgaa
aactcccagaaggtctggccgagagaggtatgcgtggattctctgtatcatgtcgatgtc
acccctgttcattcaacgctaaaagtggagaggaaccagaccactggcgagttgctgggc
tataaagaggtacttctagatgatatgggattgtcgacaaagaactccctttctctgcag
cgaccacctggccctccgtcacagtctgtaagaggcagttccaccaattacccattctgg
ccagggggcttggatgagccgagtttggatacaattaagtcaaagggagaacttgaggaa
gacattgactttggcaaggatttactgactgtgcctccgggatggaaaagaggaatggat
ttcaaaaaaaaagagcacaaagtgacccctggcttactgaacctctcgaaccttattgga
gcgatggatgacttcaatctggggggatccagcgatgaagaggacgagaaaaaggcaaag
gcgactgagaccaagcggcctttccacagaaccaacagcttggaagatttggttttacag
gagctgaaggtcactcctcagcctgaccaaagtgagcagaaagaggaaaggtccataccc
gagaaggagcagtgggctgtcccagttgatatcagcacccctgtggacgatttctacaaa
cgcatcccagatccagctttcaaatggcccttcgagccagatgtctttcagaagcaggca
atccttcgccttgagactcacgattccgtgtttgtggcggcccacacgtcagcgggaaag
actgtcgtcgctgagtacgcgatcgcactttcacagaaacacatgaccaggacaatctac
acctcgccgattaaggccctgtccaaccagaaattccgggatttcaagaacacctttaaa
gatgttggccttctgaccggagatgtccagttgcatccagaagcttcctgcctcatcatg
acgaccgaaattctcaggtccatgttgtacaatggctcagacgttattcgtgatcttgaa
tgggtgatatttgatgaagtccattacgtcaacgatgttgagaggggtgtcgtatgggag
gaagtactgatcatgctgccggaccacgtgaacctcattcttctgagtgccacagttccc
aataccctggagtttgccgactggatcgggaggataaagcagaagaagatttacgtgatc
agcaccatgaagaggccggtgcctctggagcaccacctgtacactggtaacagccagaag
acacagaacgaactcttcctgctgctcgacgctcaggggaacttcctcaccaaggcgtac
tacgcagcagttgacgccaagaaggaacgtagcagtaagcactctcagtcttttggagcc
aagcaaccggtgtaccacggaggctccagccaggataagagcgtgtggttgtccctgatt
gacatgctgaggaagaaggacagcctccccatcgtggcgttcaccttctcgcggaaccgc
tgtgatgagaatgccaacatgctgaccaccgtcgacctcaccagcactgtggaaaagagc
gagatccacattttcttccagaagtgcatctcccggttaaagggcaccgacagagagcta
ccgcaggtccttcagatggtggagcttctgaagcgggggattggtgtccatcacagtggg
atccttccaatcctgaaggaggttatcgagatgctgtttaccaggggccttgtaaagatt
ctctttgctacagagacctttgcgatgggagtgaacatgccagccagaactgtggtgttt
gacacaatccggaagcatgatgggacaaacttccgagacctgacaccaggtgaatatatt
cagatggctgggagagcaggaagaagaggactggacacaacagggatggtcatcatcctg
tgcaagtctggggtccacgagatggctgacctccacaagatgatgttggggaagccaacg
ctgttgcaatcacagttccgtctaacctacaccatgatcctgaacttgctgcgggtggag
gcgctccgggtggaggacatgatgaagcggagtttctccgagttccacaccaggaaggat
gccaagatgtacgagcagcagattcaggagctggcaaagaagctgtcaaacatggatgag
gtggagtgtgttggtcagctgagtgatttggagcactactacaatactgtgcgggagctc
ctatacacgaggaacactctacagaaaagcatcatggaatccacaagcgctttcaaggca
ctgtctgttgggcgagtcctggtggttaaaaaccaatgtcacaagaatgccctgggagtg
atcctgcaggtttgcacagattccagcaaccgatcgttcaccaccctggtcctctcagag
cccaggcaagaggacactgggaaagatgttgaggaattacctgtgacaccgactcctgac
tacctccttgccaataaactcttccttcctgaaggaccctgtggccacgtggtggagaaa
ctgaccgccaaggacatcggcagcatcaccgttaaaaccctgcgcatcaacgccgacaaa
atcatcgatgactacaagaagaggcagattcctcgcttcaggaatgacccacccggtccg
tcggtcaccactgccactcaggagctcctgcggctggttgaggcccaccctgatggcctt
gctggcctggaccccatcggcgacctgcagctgaaggacttggacctggtcgacagctac
accagggcgaggagactcgaggactctctcagcacgtttacctgcgtccacagccccagg
ttctccactgagtacacacggatgcatgagcggatgatgatcaaggatgagctggaacga
ctccgtttcctagtgtcggatcggagcctgatgctgctcccagagtacgagcagagagtt
aatgtgctgaaggccctcaagtacatcgatgagagttgtgctgtgcaattgaagggccgg
gtggcctgtgagatcagtaaccatgagctaattgtgacggagatggtctttgagaacgtg
ctgacagacttgcggccggaggagattgtcgctcttctgtcctgcctggtcttccagcag
aaaacgcaggtggagcctgaactcaatgaggttctacgcaaggggatcgagcggattcgt
ggtgttgccgagaggatagccaccctgcagcgggagtgcagcctgcgtgagtcggttgag
gattatgtagagcagtttaagtttggtttggtggaagtggtgtacgagtgggcccagggt
ctgccctttgctgagatcaccaggcttacggacgtccaggagggcatcatcgtgcggtgc
atccagcggctgaacgagacctgtcgcgatgtgcgcaacgcagcccgcatcatcggggac
cccaccctcaatgccaagatggagcaggcctcgaacctcatcaaaagggacattgtgttc
gctgccagcctgtacacccagtaa
DBGET
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