Chiloscyllium punctatum (brownbanded bambooshark): 140457021
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Entry
140457021 CDS
T11285
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03008
Ribosome biogenesis in eukaryotes
cpun03013
Nucleocytoplasmic transport
cpun03015
mRNA surveillance pathway
cpun05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140457021 (nxf1b)
03015 mRNA surveillance pathway
140457021 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
140457021 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
140457021 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140457021 (nxf1b)
03009 Ribosome biogenesis [BR:
cpun03009
]
140457021 (nxf1b)
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140457021 (nxf1b)
mRNA cycle factors
Stress granule specific factors
140457021 (nxf1b)
Ribosome biogenesis [BR:
cpun03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
140457021 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_9
YopE_N
Motif
Other DBs
NCBI-GeneID:
140457021
NCBI-ProteinID:
XP_072407026
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All DBs
Position
31:67622860..67698205
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AA seq
654 aa
AA seq
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MSEDGRHYSAPQQSGIVHNGFRGDGRKPGRRKWRLRKRGTYREHDDRVGGGFPFRKKKGR
GPFRGKMYSEGSHKSRNRGSGGPNPRSRFEDDDGDVTMNDHESPRSRFTPYGARPSRRLD
SWHDRDGGPSSIQVTVKQNSERNASANARRSWFKITIPFGKKYDKSWLLSNMHNMCSVPF
TPVQFHYDGNKAVFYVEDSTAANALKQISRRIVDKDLYRVAIIISSSVPPSSVSNELKSE
EIEHIKQCMSKRYDGSQQALDLNSIRSDPDLVSQNIEVVLNRRSSMNAVIKIIEENIPEL
LSLNLGNNRLYRLDDLADLITKAPSLKILNLSRNELKSERDLDKIKGFKLEELWLDGNPL
CDSFRDQATYVSAVREKFPKLLRLDGHELPPPISFDVETPTTLPSCKASYFGTDEIKVLV
SRFIQQYYSVYDSTDRQGLLDAYHDTACCSLSIPFSPQNPARSSLGEYFKESRNVRRLKD
PTLRAKLLKHTRLNVVAFLNELPKTQHDIASFVVDVSTQTNTLLCFTVHGVFKEVDSKSR
ESVRAFSRVFIAVPAGNAGLCIVNDQLFIRNATTEEIRKAFVTPAPTPSSSPVPTLTAPQ
QEMLQAFSQQSGMNIEWSQKCLQDNEWDFNQAAQIFTQLKAEGKIPEIAFVKQL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaggacgggcggcactacagcgccccccagcaatcaggaatcgtgcataatgga
ttccggggggatggaagaaagccaggaagacggaaatggagactgagaaaaagaggcaca
tatagagaacatgacgacagagttgggggtggttttccatttcggaaaaagaaaggacgc
ggtccattccggggtaagatgtacagcgagggaagtcacaaatctaggaatcgaggcagt
ggaggacccaacccacggtcgcggttcgaggatgatgatggcgatgtgactatgaatgat
catgagtcaccacggtcacgatttacaccgtatggtgcaagaccatctcgtcgcctggac
agttggcatgaccgtgatggagggccctcaagcattcaagttacagtgaagcaaaattca
gagagaaatgcaagcgccaatgcacgccgatcctggtttaaaatcactattccttttgga
aagaaatatgataaatcctggcttttgtcaaacatgcataatatgtgcagtgttcccttt
actcctgttcagtttcactatgatggcaataaggcagtattctatgttgaagattctaca
gctgcgaatgctttaaagcagatatcgagaagaattgttgataaggatttgtacagggtg
gccatcatcattagttcctcggtgccgccatcttccgtttcaaatgagctcaaatcagag
gagattgaacacataaagcagtgtatgagtaaacgttacgatggatcacagcaagcccta
gatctaaacagcatacgtagtgacccagatctcgtctctcagaatattgaagtagtgtta
aacagaaggagttccatgaacgcagtcatcaaaatcatagaggagaacattccagagtta
ctctcgctcaacctgggcaataacaggctctaccgactggatgatctggcagacctgatc
accaaagcgcccagtttgaaaattttaaacctttccagaaacgagctcaaatccgaaaga
gatctggacaaaataaaaggcttcaagctggaagagctgtggttggatgggaaccctctg
tgtgacagcttccgggatcaggctacgtatgtcagtgctgtcagggaaaaattcccaaag
ttactcagactggatggccatgaactcccacctcccatttcctttgacgttgagactcca
actacgcttccttcgtgcaaggctagttattttggtacagatgaaatcaaagtgcttgta
tcacgattcatacagcagtactattcggtttatgattcaacagacaggcaagggctgctg
gatgcctaccacgatacagcttgctgctcgctcagtattcccttttctccacagaaccct
gccaggagcagtctgggagagtatttcaaggagagcagaaacgtgaggagactgaaggac
ccaacacttcgggcgaagctgctgaaacacaccagactgaatgttgtcgccttcctcaac
gagctcccaaagacacagcatgacatagcctcctttgtggtggatgtgagcactcaaaca
aatacattactctgttttactgtacatggagttttcaaagaagtggatagtaaatccagg
gagtctgtgagagcgttctcaagagtgttcattgctgtacctgctgggaatgcagggctc
tgcattgtgaatgaccagctgttcatcaggaatgccaccactgaggagatccgcaaggcc
ttcgtgacgccggcacccacaccgtcaagcagtccggtgcccaccctcacagcaccccag
caggaaatgctgcaggccttctctcagcagtcgggcatgaacatagagtggtcgcaaaag
tgtctgcaagacaacgagtgggacttcaatcaagctgcccaaatcttcacacagcttaag
gctgaaggaaaaattcctgaaatagcgtttgtgaagcagttatga
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