Chiloscyllium punctatum (brownbanded bambooshark): 140458239
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Entry
140458239 CDS
T11285
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpun04121
]
140458239 (pdzrn4)
Enzymes [BR:
cpun01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140458239 (pdzrn4)
Ubiquitin system [BR:
cpun04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
140458239 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
Sina_ZnF
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-TRAF
TRAF3_RING
GRASP55_65
zf-rbx1
Prok-RING_4
PDZ_Tricorn
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
140458239
NCBI-ProteinID:
XP_072408669
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All DBs
Position
32:65851448..66329271
Genome browser
AA seq
1074 aa
AA seq
DB search
MGFELDRFNEEVDPDLKCNLCNKVLEDPLTTPCGHVFCASCVLPWVVQKGVCPVQCRRMS
TKELNHVLALRNLISKLDIKCDYRSRGCGKVVSLQKLAEHVEMCDYSPARCRHAGCQEVL
NLKDMDHHMRESCECRPVGICEQGCGLVLLHRELSPAAAAAGLTHCCVAALRSRVGSLQR
RAAGLARELKKQAVRAGHREQALLAQVSALQSEVQLTALRYQKKFNQYMVHISSISRNIA
ACCRENGETKSLTIVLHRENDTLGFNIIGGRPNPESEEDSPSEGIYVSKVMEKGPADRAD
GLEVHDRIIEVNGKDLSKATHEEAVEAFRNAKDPIVVQVLRRAPITKNHGSSQEVPLVDA
GTQTEITFEHIMALSKLRSSSPPVPDICPYLLSDSCHSLHPMAHDYYEASDYLPNLAHDG
DRADELEYEEVELCRISSQEKLGLTVCYRTDDDEDDSGIYVSEVDPNSIAAKDGRIREGD
RIVQINGKDVQDREEAVALLSSEESRNILLLVARPEIQLDEGWLDDDRNEFLDELHMDML
EQQHNQAMQFTATTLEQKKHEEDGGTTDTATTSSNNHEKDSGLGRTDDSVRNDESSEQEI
LGEEQNSTSLQSQGDLGYSQDTLGSSEIQCNESFISGEYNDSDFVGTQDEECERFKELLE
LKCKMSNRSQFDLYYSTSTIQCGRRQQEVVDRELEMLNEELRNIELECQNIMQAHQLQTV
REEYGDVWSIHGSGFGNYNTSIDSPRGKKLADIMEHPEKSDKDSSSAYNTAESCRSTPLT
VDRSPDGSLQRIVSITNKKNLRSSIEAVQAAAMASPSSSSPRRISAEASPTVSSSSETPE
TAVPGDDTEHVTEGSKSGEGGEHVPYLSAYHSSPYRHVNIPAHARHYQSYMQLIQQKSAV
EYANSQLSLVSMCKDAHKATADSKAEWKVKIRSDGTRYITKRPVRDRLLKERAMKIKEER
CGMTTDDDAVSEMKTGRYWSKEERKQHVVRAKEQRRRREFMMRSRLECLRENPQSGGEGK
KEVNIIELSHRKMMRKRNKKIFDNWMTIQELMTHGAKSPDGTRIYNSFLSVTTV
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgagctggatcgtttcaacgaggaggttgaccctgatctaaagtgtaacttg
tgcaacaaggtgttggaggaccccttgaccacaccgtgcggtcatgtcttctgcgcgagt
tgtgtgctgccctgggtggtgcagaaaggtgtgtgccctgtccagtgccggaggatgtcc
accaaggagctcaaccacgtcctggctctgcgaaacctcatctccaagctggacatcaag
tgcgactacaggtcccggggctgcgggaaggtggtgagcttgcagaagctggccgagcat
gtggagatgtgtgactacagcccggcgaggtgccggcacgcaggctgccaggaggtgctc
aacctgaaggacatggaccaccacatgcgggagagctgcgagtgccgcccggtgggcatc
tgcgagcagggctgcgggctggtgctgctgcaccgggagctgagcccagccgccgccgcc
gccggcctcacccactgctgcgtggcggctctccgctcccgggtgggctcgctgcagcgg
agggcggccggcctggcccgggagctcaagaagcaggcggtccgcgccggccaccgggag
caggcgctgctcgcccaggtctcggcgctgcagagcgaggtgcagctcaccgccctccgc
taccagaagaagttcaaccagtacatggtgcacatcagcagcatcagcaggaacatcgcc
gcctgctgcagggaaaatggcgaaacaaaatcgttaactatagtcttgcatcgagaaaat
gacacacttggatttaacattattggcggaagacccaatccggaaagtgaggaagattct
ccaagtgaaggaatttatgtttccaaagttatggagaaagggcctgctgacagagcagat
ggactggaagttcatgacaggatcattgaggtcaatgggaaggatctctcaaaagccact
cacgaggaggctgtggaagctttccgaaatgccaaggacccaattgtcgtgcaggttctg
cgtcgggcccccatcacaaagaatcatggcagttcccaggaagttccacttgtggatgct
ggcacacagacagaaattacttttgagcacatcatggctctctccaagttgaggtcgtct
tcacctccagtacctgacatctgcccgtatctgttatcagacagctgtcactctctccat
cccatggcccacgactactatgaagccagcgattaccttcccaacttagcacatgatggg
gatcgagccgacgagctggagtatgaggaggttgagctgtgccgcatcagcagccaggag
aagctaggccttactgtctgctaccgaactgacgacgacgaggacgacagtggcatctac
gtgagcgaggtcgacccaaacagcatcgcggcgaaagatgggcgtatcagagagggcgat
cggatcgttcaaataaatgggaaggacgttcaagatcgggaggaggccgtggccttactg
tccagcgaggaaagcaggaacattctgttgctggttgccagaccagagattcagttggat
gaaggatggcttgatgatgaccggaatgaatttcttgatgagcttcatatggatatgttg
gaacagcaacacaaccaggcaatgcagttcacagctaccacactcgagcagaaaaaacat
gaagaagatggtgggacgaccgataccgcaactacctcttcgaataaccacgagaaggac
agcgggctcggccgcacagatgacagtgtgaggaatgatgagagttcggaacaggagatc
cttggagaggagcagaacagcacctcgctgcaaagtcagggggacctgggctacagccag
gataccctgggcagcagtgagatccagtgcaacgagagcttcatctcgggggaatataat
gactctgactttgtgggcacccaggatgaagaatgcgagcggttcaaggagctcctggag
ctcaagtgcaagatgagcaatcgaagccagtttgacctctactactccaccagcacaatc
cagtgtggcaggaggcagcaagaggtggtggaccgcgagctggagatgctcaacgaggag
ctaaggaatatcgagttggagtgccagaacatcatgcaggcccaccagctgcagacggtg
agggaggaatacggcgatgtgtggtcgatccacggcagtggattcgggaactacaacact
agcatcgactcgcccagggggaagaaactcgccgacatcatggagcacccggagaagtca
gacaaggacagctccagtgcctacaacacagctgagagctgccgcagcacccccctgact
gtggaccgctcgcctgacggctcactgcagcgaattgtcagcatcaccaacaaaaagaac
ctgaggagctccatcgaagctgtccaggctgctgccatggcctcgccatcatcgtcgtca
cccaggcgcatcagtgcggaggccagccccaccgtcagcagctcctcagagacaccggaa
acagccgtgcctggtgacgacacggagcatgtgacagaggggagcaaatccggcgagggt
ggtgagcacgtgccctacctgtcagcctatcacagctcaccctaccgacacgtcaacatc
cctgcgcacgcgcggcactaccaaagctacatgcagctcatccagcaaaagtcagcggtc
gagtacgccaacagccagctgagcctggtgagcatgtgcaaggatgcccacaaggccaca
gcggactccaaggccgagtggaaggtcaagatccgcagtgatggcactcgctacatcacc
aagcgcccagtgcgtgaccgcctgctcaaggagcgtgccatgaagatcaaggaggagcgc
tgcggcatgaccacagatgatgacgccgtgagcgagatgaagacgggccgctactggagc
aaggaggagcgcaagcaacacgtcgtgcgggccaaggagcagcggcggcgcagagagttc
atgatgcgcagccgcctggagtgcctcagggagaacccccagagtggcggtgagggcaaa
aaggaggtcaacattatcgaactgagccacagaaaaatgatgaggaagcgcaacaagaaa
atctttgacaactggatgacaatccaagaactcatgacacatggtgccaagtccccagat
ggcacgagaatctacaattccttcctgtcagttactactgtgtga
DBGET
integrated database retrieval system
