Chiloscyllium punctatum (brownbanded bambooshark): 140459666
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Entry
140459666 CDS
T11285
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140459666 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpun03041
]
140459666 (snrnp200)
Enzymes [BR:
cpun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140459666 (snrnp200)
Spliceosome [BR:
cpun03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
140459666 (snrnp200)
Complex C
U5 SnRNP specific factors
140459666 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DrmE_N
Motif
Other DBs
NCBI-GeneID:
140459666
NCBI-ProteinID:
XP_072410109
LinkDB
All DBs
Position
35:14852509..14899681
Genome browser
AA seq
2138 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGSRMGDKAQRTK
PQLQEERRAKRRKRDEDRHDMNKMKGYTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKLRDKERRKEIEMLLGQLEDTRYHVLVNLGKKIS
DYGGDKEVQNMDDNIDETYGVNVQFESDEEEGDEDAFGEVREEASDEDTEGEEADISCTL
SANLGAAGDVLSAKKKDLHPRDIDAFWLQRQLSRFYDDAIMSQKKADEVLDILKTAGDDR
ECENQLVLLLGFNTFDFIKILRQHRMMILYCTLLASAQSEAEKERIQNKMEADAELSKVL
YKLQETEKEDIIREERSRRERVRQSRVDTDLEAMDLDRDGEILAPRQVLDLEDLAFAQGS
HLMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSSDEQLISVEKMPKYTQAAFEGFKT
LNRIQSKLCKAAMETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFSKRLASYGISVAELTGDHQLCKEEITATQVIVCTPEKWDIITRKG
GERTYTQIVRLMIIDEIHLLHDDRGPVLEALVARTIRNIEMTQEDVRLIGLSATLPNYED
VATLLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKVMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
SFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDVLQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMITRLPDM
LNAEIVLGNVQTAKDAINWLGYTYLYIRMLRTPTLYGISHDELKSDPLLEQRRLDLIHTA
AIILDKNNLVKYDKKGGNFQVTDLGRIASHYYITHESMATYNQLLKPTLSEIELFRVFSL
SSEFKNISVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMAD
MVYVTQSAGRLMRCIFEIVLNRGWAQLTDKTVNLCKMIDKRMWQSMSPLRQFRKLPEEVI
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYIHQFPKLELSVHIQPITRSTLKV
ELTITPDFQWDEKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVMFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFEHL
YQDKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYADWYEKFQQKLSKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSTTATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMSKPVYHAIMKHSPKKPVI
VFVPSRKQTRLTAIDILTFCAADVQPQRFLHCTEKDLVPYLEKLNDNTLKETLANGVGYL
HEGLNLAERRIVEQLFRSGAVQVVVASRSLCWGMNISSHLVTIMDTQYYNGKIHAYVDYP
IYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSQLVENTLNDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYENIPI
RHHEDNLLRQLYQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHVKRCTDRGTD
SIFDIMEMEDDERNALLQLSDAQMMDVARFCNRYPNIELSYEVIDRENIKSGSSVVVMVQ
LEREEEVTGPVIAPLFPQKREEGWWVVVGDPKTNSLISIKRLTLQQKAKVKLDFLAPAPS
TQHYTLYFMSDAYMGCDQEYKFNIDVKEADSEGESDSD
NT seq
6417 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgactgctcgtagcctgcaatatgagtacaaagcgaactctaaccttgta
ttgcaagcagatcgatcattgatcgaccgaacaagacgagatgaacccacaggagaagtg
ctgtctctggttggaaagcttgaagggtcccgaatgggagacaaagctcagagaacaaaa
ccacagttgcaggaagaaaggcgagcaaagaggagaaagcgtgatgaagaccgacatgat
atgaacaaaatgaaaggatacactttgttgtcagagggcattgatgagatggttggaatt
gtgtacaaacccaaaacgaaggagaccagagagacctatgaggtgctgctcagtttcatt
caggctgcacttggtgaccagccacgtgatattctctgtggagcggcagatgaggttctc
gctgtgctgaaaaatgataaactgcgtgacaaggagcgacggaaggaaatagaaatgctc
ttgggacagttggaggatacccgttaccatgtactggtaaaccttggaaagaaaatcagt
gactacggaggagacaaagaagtgcagaatatggatgataacattgacgagacatatgga
gtgaatgtacagttcgagtctgatgaagaggaaggtgatgaagatgcatttggtgaagtg
cgtgaagaagcatcagatgaggacacggagggtgaggaagctgacatcagctgcacactt
tcagcaaatctgggtgctgctggagatgtactgagtgcaaagaagaaagacctgcatcct
cgagatattgatgctttttggctccagaggcagctcagccgcttctacgatgacgctatt
atgtcacagaaaaaggcagatgaagtcctggatatcctcaagacagctggtgatgaccgt
gaatgtgagaatcagcttgttttgcttcttggcttcaacacttttgacttcatcaagatt
ctaaggcagcatcgcatgatgattttgtactgcacactgttggccagtgctcagagtgag
gcagagaaggagaggattcagaataagatggaggcagatgcagagctttccaaagttctc
tacaaactccaagagactgaaaaagaggacataattcgggaggaaagatcccgtcgagaa
cgagttcgtcaatcccgtgtggatacagacctcgaagcaatggaccttgatcgagatgga
gagattctggctcccaggcaggttctggatttggaggatctggcctttgcacaggggagt
catcttatggcaaacaagcgatgtcagctaccagacggttcattccgcaagcaacgcaag
gggtatgaggaggtgcatgtgccagctcttaaaccgaagccattcagctcagatgagcaa
ctgatatctgtagagaagatgccgaagtacacgcaagcagcatttgagggcttcaaaaca
ctgaatcggattcaaagtaagctgtgcaaagcagccatggaaaccgacgaaaatctgcta
ttgtgtgctcccactggtgccggtaagaccaatgtggctctgatgtgcatgttacgtgag
attgggaaacacattaatatggatggaaccattaatgtcgatgacttcaagattatttac
attgcaccgatgagatcactggttcaggagatggtgggcagtttcagtaagcgtttagca
agctatggaatcagtgtcgcagagctgacaggggaccatcaactgtgcaaagaggagatc
actgcaacccaggtgattgtgtgcaccccagagaagtgggacatcattactcgcaaggga
ggagagcgtacttatactcaaattgtgcgactcatgataattgatgagattcacctcctg
catgatgatcgcggtccagtattagaggccttagttgccaggacaattaggaacattgaa
atgactcaagaagatgtgcgattgattgggttgagtgccacgctgcctaattatgaagat
gttgcaactcttctgcgagttgatccagctaaaggtcttttctattttgacaacagtttt
cgtcctgttccactggagcagacatatgttggaataactgaaaagaaagcaatcaaacgt
ttccagattatgaatgagattgtttatgagaaagtgatggagcacgctggaaagaatcag
gtgctggtgtttgttcactcccgtaaagagacaggaaaaacagcgcgtgcaatccgagat
atgtgtctggagaaagacacgttgggtttgttcctgcgagagggatcagcctccacagaa
gtgttacggacagaggcggagcagtgtaagaatctggagctgaaggacctgcttccctac
agttttgctattcaccatgctggtatgaccagagtggatcgaacactggtggaagattta
tttgctgacagacacattcaggtgctggtctcgacagcaactctggcctggggtgtcaat
ctgcctgcgcacacagttattatcaaagggacacaggtatacagcccagagaagggacgc
tggacagagttgggtgcactggatgtacttcagatgttaggccgtgcaggacgaccgcag
tacgatacaaaaggtgagggaatccttatcacatcacatggtgagctgcagtattaccta
tcccttctcaaccagcagctccccattgaaagtcagatgatcacaagactccctgacatg
ctcaatgctgagattgtccttggaaatgtccagactgcaaaggatgcaattaactggttg
gggtatacatatctctatattcgcatgttgagaaccccaacactctatgggatctcgcat
gatgagctgaagagtgaccccctactggagcagcgcagactggaccttatccacactgct
gccattatccttgacaaaaataaccttgtgaaatatgacaaaaagggtggcaactttcag
gtgactgacctcggccggattgcaagtcactattacatcacacatgaaagtatggccacc
tacaatcagcttttgaaacctaccctgagtgaaatcgagctcttccgagtattttcactg
tcttctgagttcaagaacatcagcgtgagagaggaggagaaacttgagttgcagaaattg
ttggaacgagttcccattcctgtcaaagagagtattgaggagccgagtgctaagatcaat
gtgttgcttcaagcctacatctcccagctgaagctggagggatttgcactcatggctgat
atggtctatgtgactcagtctgcaggccgtctgatgcgttgtatatttgagatcgtcctt
aaccgaggctgggctcagttgacagacaagactgtcaatctctgcaaaatgattgataaa
cgaatgtggcaatctatgtcacctctgcgacagttcaggaagctgccagaagaagtgata
aagaagatagagaagaagaattttccatttgagcgactctatgacttgaatcataatgaa
ataggagagttgatccgaatgccaaagatgggcaagacaatacacaagtacattcaccaa
ttcccaaaacttgaattgtctgttcacatccagcccatcacacgctcaacactgaaagtg
gaactgacaatcacacctgatttccagtgggatgagaagatacatggatcctctgaggca
ttctggatcctggttgaggatgtagacagtgaagttatcttgcaccatgaatattttctg
ttgaaggcaaaatatgctcaagatgaacatttggtgatgttctttgtaccagtatttgaa
cctctccctccacaatatttcatcagagtggtgtcagaccgttggctctcctgtgagacg
caacttccagtttcattccggcacctgatacttccagaaaagtatcctccccccacagaa
ctactggacttgcagccgctgccagtgtcagcattgaggaacagtgcgtttgaacatctc
taccaggataaattccctttctttaacccaatccagacacaagtcttcaatgcagtttat
aacagtgatgacaacgtgtttgtgggagctcccacgggtagcgggaagacaatttgtgcg
gagttcgcaatccttcgaatgcttctgcagaactctgaaggacgctgtgtgtacataact
ccaatggaggccttggctgagcaggtttatgcagattggtatgagaagtttcagcagaag
ctcagcaagaaagttgtcttactgacaggcgagacgagcaccgacctcaaactgttgggc
aagggaaatatcatcatcagcacaccggagaaatgggacatcctgtcccgacgatggaaa
cagaggaaaaatgtccaaaatgtaaacctgtttgtcgtggatgaggttcacttgattggt
ggagagaatgggcctgttttggaagttatctgctcccgaatgcgatatatctcctcccag
attgagcggcccattaggattgtggctttaagttcatcgctgtccaatgcgaaggatgtg
gctcattggcttggctgtagcaccactgcaactttcaactttcaccccaatgtgcggcca
gtacctctggaactacacattcagggttttaatattagccacacgcagactcgccttctg
tccatgtctaaacctgtctaccatgccatcatgaagcactctcccaagaaaccagtcatt
gtctttgtgccctctcgcaagcaaacaaggttgactgccattgatatccttacgttctgt
gctgctgatgtccagccacaaaggtttctacactgcacagaaaaagacttggttccatac
cttgaaaaactaaatgacaacactttaaaggagacccttgcaaatggagttggttatctg
catgaggggctcaatctggctgagcgcagaattgtggagcaactcttccgctctggtgca
gtgcaagtggtagttgcctcaaggagtctctgttggggaatgaatatctcctctcacctt
gtaaccatcatggatacccagtattataatggcaaaattcatgcgtatgtggattaccct
atttatgatgttctgcaaatggtcgggcgagctaatcgtcccttacaagatgacgaaggg
cgatgtgtcattatgtgccaagggtcaaagaaggatttcttcaagaagtttctttatgag
ccactgccagtggagtcccaccttgaccattgcctacatgatcatttcaacgctgaaatc
gttacaaaaaccatagagaacaagcaggatgcagtggattacctgacctggaccttcctt
taccgtaggatgacccagaatccaaattattataatttgcagggtgtgtcccacagacat
ctttcagatcatctttcacagttggtagaaaatactctgaatgacttagaacaatccaag
tgcatcagcattgaggatgagatggatgtggcaccattaaatcttggaatgattgcagct
tactactacatcaattacaccacaattgagctgtttagtatgtcactgaatgccaaaacg
aagatccgaggtctgattgagatcatctccaacgccgcagagtatgaaaatattcccatt
aggcaccatgaagataacctgctgcgacagttgtatcagaaggtccctcacaagcttaac
aacccaaaattcaatgaccctcacgtgaagacaaacttgctccttcaggcacacctttct
cgtatgcaactgagcgccgaactacagtccgacacagaagagatcctcagtaaggcaatt
cgtttaatccaagcttgtgtggatgtgctgtccagtaatggctggctcagcccagctctg
gcggcaatggaacttgcccagatggtgacccaggcgatgtggtccaaggactcctatttg
aagcagcttccacatttcacttctgaacatgtcaaacgctgtactgacagggggactgac
agtatctttgacatcatggaaatggaggatgatgaacgcaatgcactgctgcaactctct
gatgcacagatgatggatgttgcccggttttgtaaccggtatcccaacattgagctttcc
tatgaggtgattgacagggaaaatatcaagagtggctcctcagtcgtagtgatggtacag
ttggagcgtgaggaggaggtgactggacctgtcatcgcacccttattccctcagaaacgg
gaggaaggttggtgggtggtcgttggagaccccaagacgaacagcctgatatccatcaaa
agactgaccttacagcagaaggcaaaggtgaaacttgattttcttgcaccagctccaagt
acccaacattacacgctgtacttcatgagtgatgcgtatatgggctgtgatcaggagtac
aaattcaatattgatgtcaaggaagctgacagtgaaggtgaaagtgactctgactaa
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integrated database retrieval system
