Chiloscyllium punctatum (brownbanded bambooshark): 140462822
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Entry
140462822 CDS
T11285
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun04510
Focal adhesion
cpun04512
ECM-receptor interaction
cpun04518
Integrin signaling
cpun04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140462822 (col9a3)
04518 Integrin signaling
140462822 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
140462822 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
140462822 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cpun00535
]
140462822 (col9a3)
Proteoglycans [BR:
cpun00535
]
Extracellular matrix (ECM) proteoglycans
Others
140462822 (col9a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
140462822
NCBI-ProteinID:
XP_072412261
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Position
37
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AA seq
681 aa
AA seq
DB search
MAMIRALGLLVISQLLLKAGAQELIVEPFGPSGPAGPPGKDGIDGEPGPAGLPGPPGVPG
EPGDPGSPGPTGLAGLPGIDGLPGPDGTAGADGALGERGDPGPPGPPGVSRLTEPGRIGD
PGSQGDVGLPGAQGPQGQRGEDGLPGLPGPPGPPGPPGEPGLYTGEGSGDFSCPAVCPPG
PAGPPGMPGFKGHTGHKGERGEPGKRGSQGDPGPSGVSGIPGPIGLQGPRGLRGLPGKPG
PTGDRGLTGFRGPVGPPGPPGKVGDKGPKGHIGFQGTKGDPGKIGPRGLPGIAGHKGELG
IPGRDGRDGNPGINGEKGEPGRNGAPGEKGPVGQPGLPGKPGPKGASGELGSQGPMGGPG
PQGPPGSAGPLGDSGMMGERGPRGVDGEMGPPGGRGIRGRRGFQGRKGESGEPGVPGPTG
IRGDFGERGPVGASGPKGNQGLAGSDGLPGEKGEMGQPGPQGQKGEPGVRGEVGPKGNPG
PAGVPGTDGVPGPPGPVGIAGERGIPGTSGKPGSPGKLASEQQIRELCHSLISDQIALLA
NNLRRPMAPGMIGRRGPPGPPGPPGPKGGVGHPGRRGPPGLTGPSGELGDTGPRGDHGVK
GDKGVIGKSLGGLVGPQGPAGPPGVMGLSKNGRDGAQGDPGPPGESGRPGRNGAMGTPGI
CDTSACQGAIAAVKSGSPKKS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggccatgatcagggccctggggctgctggtaatctcccagctcctgttaaaggccgga
gcccaggagctgattgtagagcctttcggaccgagtgggcccgcgggacccccgggcaag
gacggaatcgatggtgagccaggaccagcgggtttgccaggccctccgggtgtgccaggg
gaaccaggagaccccgggagtcctggacctactggccttgctggccttccaggaatcgat
ggtctgcctggtccggatggaactgctggtgctgatggtgcccttggtgaaaggggagac
cccggaccacccggaccaccaggcgtgtccagattaacagagccggggaggattggtgat
ccgggatctcaaggagatgttggactgccaggtgcccagggccctcaagggcaaaggggt
gaagatggtctacctggacttccaggaccacctggacctcccggacccccgggtgaacct
gggctttacacaggagaaggaagtggtgacttttcttgcccggctgtctgccctcctggt
cctgctggtcctccgggaatgcctggcttcaagggacacacagggcacaagggagagcgt
ggagagccaggcaaaagaggttcccagggggatcctggaccttccggcgtgtcaggtatc
cctggaccaattggattacagggtcctcgaggattgagaggccttcctgggaagcctggg
cctactggtgacaggggtctcacaggattccgtggaccagtcggtcctcctggtccgcct
ggcaaagttggagataaaggtcccaaaggacacattggattccaaggaacaaagggagat
ccgggcaagattggtcccagaggtctgcctggaatcgcaggacacaagggtgaactggga
attccaggtcgggatggacgagacggaaatccaggaatcaacggtgaaaagggtgagcct
ggacgtaacggggctcctggagagaaaggtccagtgggacagccaggattacctggaaag
ccaggacctaaaggagccagtggtgaactgggaagtcaaggtccaatgggtggtccagga
ccccaaggacctcctgggagtgcgggacctttgggagactcaggaatgatgggagaacgt
ggaccaagaggagttgatggggagatgggacctcctgggggacgtggaatccggggtcgg
agaggcttccagggtcgtaaaggtgaaagtggtgagccaggtgtcccaggacctacagga
atccgtggggactttggggaaaggggccctgttggagcatcaggtcccaaaggtaaccag
ggacttgcaggttctgatggacttccaggagaaaaaggagaaatgggtcagccaggaccg
cagggacagaagggagagccaggagttcgtggtgaggtggggcccaaagggaaccctggt
ccagctggggttcctgggacagatggtgttcctggtcctcctgggccagtgggtatagcc
ggagagcgtggcatccctggaacttctggaaaaccaggttctcctggaaaacttgcaagt
gagcaacagatccgggaactctgtcacagcctgatcagtgatcagattgcattgttagct
aataatctgagaaggccaatggcccctggaatgataggaagacgtggcccccctggtcct
ccaggtccaccagggccaaagggcggagttggccatccaggcagacgaggtccaccagga
ttgactggaccatctggagaacttggtgacacaggcccacgaggtgaccatggtgtaaag
ggagacaagggagttatcgggaaatctcttggtggcttagtaggacctcaagggccagca
gggcccccaggagtcatgggacttagtaagaatgggcgagacggagcacaaggagaccca
ggccctccaggagagtcaggacgacctggaagaaatggcgctatgggaacaccaggaatc
tgcgatacctcggcctgccagggagctattgcagcagtaaaatcagggtctcctaaaaag
tcatga
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