Chiloscyllium punctatum (brownbanded bambooshark): 140463386
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Entry
140463386 CDS
T11285
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpun03009
]
140463386 (pdcd11)
Ribosome biogenesis [BR:
cpun03009
]
Eukaryotic type
90S particles
Other 90S particles
140463386 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
Suf
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_12
NRDE-2
ARM_TT21_N
ARM_TT21_5th
DUF7017
TPR_6
TPR_CcmH_CycH
ARM_TT21
TPR_7
Motif
Other DBs
NCBI-GeneID:
140463386
NCBI-ProteinID:
XP_072413357
LinkDB
All DBs
Position
38:16026274..16084019
Genome browser
AA seq
1829 aa
AA seq
DB search
MIVGSVSADSESLTISSVARMAAMDKDFPRGGVQRNPTEEKVKRSVDNENLFKMHHDDVK
KKQKNKKESIPVEAKKQKTKNSGTLQTNQRIKAQRLSLKELNVGMLLLGCVKEVNDFELV
IGLPQGLTGYVSLTNICDAYTKSLREQIDEELSEDLVVLSDLYSPGMVIRCAVYELGKTN
SNHHSLKLSINPKDVNKALSPEALQAGMLLSGCVSSVEEHGYLVDIGVKATKAFLSHMKT
QEFIKSRNRGMPLRVGQYLTALVESVKNDGRIAQLSICRTDVAAATATEDQKWSLSNLLP
GLIIRAEIQKVDSCGLILQFNSGLSGTVDVLHLDPRRARTYRPGQQVKACVLYVQPETKA
VHLTLRPAFLHPGAMLQEPSPHGIGKIFEQCTVRSYYKGAGVIFQLDDGTFAYSPKSHLS
GTAMSFDPKDFSEGSRHRCRVIDHSPMEQMALVSLRKSILDAQFLKYQDVKLGQLVEGKV
TSLESYGMHVKLTDHIQGLVPRTHLSDIPLKHPEKLYSVGNLVKCRVLMVNSETKKLTLT
LKNTLVGSKLSVITQYKEAVPKQLAHGYIVSVKPYGCIVCFYGDVKGLVPQHKLSTQPIP
FPEKVFYVGQVVKVIVLKCDPTQKKLLLSMKTTQKVGTDADESSMYQTGKIVDVEVLAKV
ENGLKVSILPQRAPAFLPTVHLSDYVSNCQLLAERLQKGDILSNVMCLSQAHGQIILCRK
AAVIAFAKQAQLPKDVLELQVGMQMPGFVKNIMTYGVFVEFPHGLYGLAPKAAMSDKFVT
NIEDHFVVGQTVVAKVTNLDEEKKRVLLTLKVSECGSGEEDDESLALLSQYCGELEFVRT
LMSSRDSPVAVSLSRLATGQRLQLVVSRVEGDGTIYFTGTQVTKLTVTASRYHQEGVSLS
PGQQCTAVVVFVDLLSSIVHVSVRQELLNADVKKLKGISQHPAVVQFVTQDVAVVSLAGT
SKLLLVPVTFHLNDTFHFDSEKLFVGQTISVLLHTAGVEHHGIPLAARGRKKHRSVKRER
QMSEEEDLTPVVQHALYVGNVVSGTVKSVQPNCLLIKLEGGVTGFVHVSEIDDHVPVGSF
PTTKLKVGNVETAKVIGGREVKSHRFLPITHPNFSMTIPVLTLRPSKLSGDCELMFQSED
LADQLKSYKPGQVLTCYVSKYNHTRKCLVVEVTPVISGSVELLLMSQKIKHLKFPKKHFQ
TGRALTAKVIGPDTMNNCLSLSLTGLCSLDEGSITLGIIKKVTPHLGVTIQLPFGKNGQV
GLCDIADSYKESQFEELTPGHIVRCRVISNDEHELAVSLRNSRVYPENESSISDPEITSA
KDLQKGQLLRGYVKAVRESGVLVSLSSSVLGRVLFDYVSDHFVKDHGIFMRNIPKGKLVT
VKVLSVKGEVELSLLPQDTGAPDVLSKSGLPLKQSKMLSNAEGTVSKTFKRKRRGSESEQ
ISSKKLKTSRKQKNLEEAECGVEVYFHEEDSDTEVQQQPNPRKTQVPRLEVPLSFAWDVS
LNTISPVTRKREDISSDSEEDEPEDSKAKVTKKEKELGKWQMEKELTKVEQQLMDPSRHP
QSAEDFDRLVLSSPNSSILWTQYMAFHLHATEIEKARTVAERALKTISFREEQEKLNVWV
ALLNLENLYGTEESLMKVFERAVQYNEPLKVFQQLASIYTKSEKYKQADSLYNTMLKRFR
QESTVWLNYATFLLKQGKTDCTSALLQRALKCLPQKEHVDIIAKFAQLEFRLGDTERAKA
MFESTLNNYPKRTDLWSVYIDLMVKHGNQDEIRHLFERVIHLKLAPKKMKFFFKRYLEYE
KKHGSEERVQDVKEKALKYVESTSLPVDS
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgggttcggtttcagcagattcagagtcactgacgatctcctcggttgcaaga
atggctgcaatggataaggatttccctcgtggaggggtgcagagaaatcccactgaggaa
aaggtgaagaggagcgtggacaatgaaaacctgtttaagatgcaccatgatgatgtaaaa
aagaaacagaaaaacaagaaagaatcaatccctgtcgaagcaaagaaacagaagacaaag
aatagtggtacattacaaacaaatcaaaggatcaaggcacagcgtctctccctcaaggaa
ctgaatgttgggatgctcttgctcggctgtgtgaaggaagtgaatgattttgaactcgtc
attgggttgccccaggggctcactggttatgtcagtctcaccaacatctgtgatgcatat
accaaatccctaagggaacagattgatgaggaactgtcagaggatctggtagtcctgtca
gatctgtacagccctggtatggttatacgatgtgctgtgtacgagctcggaaagacaaat
tccaaccaccacagcttgaaactctccattaacccgaaggatgtaaacaaggcattgtct
cctgaagcactgcaagctggcatgctactctcaggctgtgtatccagtgttgaggaacat
ggctatctggtcgacattggagtcaaagccaccaaagctttcctctcacacatgaaaacc
caggagttcataaagagtagaaatcgaggcatgcctctccgtgttggtcaatatctaacc
gcactggtggagtcagtgaagaatgatggccgcattgcccagctctcgatctgtcgtact
gacgttgctgcagcaacagcaactgaagatcagaaatggagtctctccaatctgctccct
gggctgataatcagggctgaaattcaaaaggtggatagctgcggtttgattctgcagttt
aactctggtttgagtgggacagtcgacgtcctgcatctggatccacggcgagccaggacc
taccgtcccgggcagcaggtgaaagcttgtgttctgtatgtgcagccggaaacaaaggct
gtacacctgacattgcggcctgccttcctacatccgggggcaatgttgcaggagccaagc
ccccatgggattggaaagattttcgagcaatgcactgtgcggagttactacaaaggagct
ggtgtcatctttcagctggatgatgggacctttgcctattcacctaaatctcatctgtct
ggtactgccatgtcctttgacccaaaagacttcagtgaaggttccaggcataggtgcagg
gtcattgaccacagcccaatggaacagatggctctggtgtctctgagaaagagcattctt
gatgcccaatttttgaagtaccaggacgttaagctgggacagctggtcgagggtaaagtc
acctctctggagagttatgggatgcacgtgaagctaactgaccacattcaggggctggtg
cctcgtacacatctgtcagacattcccctgaaacacccagaaaagctgtacagtgtggga
aatctggtgaagtgcagggtactgatggtaaacagtgagaccaagaaactgaccctgact
ctgaagaacacgctggttggttcaaagctttctgttatcacccagtacaaggaggctgtt
cctaagcaactggcccacggttacatcgtctctgtgaagccctatggctgcatcgtgtgc
ttctatggtgatgtgaaagggctcgtccctcagcacaagctgagtacccagcccatcccc
tttccggagaaggtcttctatgttggtcaggttgtcaaggtcattgtcctaaagtgtgac
ccaactcagaagaagctgctgttatccatgaaaaccacacagaaggtgggaactgacgct
gatgagtcttcaatgtaccaaactggaaagattgtcgatgtggaagtcttggcgaaggtg
gagaatgggctgaaggtctccattctcccacagcgtgcacctgcctttctcccaacggta
cacctctcggactatgtctcaaattgtcagcttcttgctgaaaggctgcagaagggtgac
atcctctccaacgttatgtgtttaagccaagcccatggccagattattctttgtagaaaa
gctgcagtgatagcttttgctaaacaagcgcaactgccaaaggacgtattggaactccag
gtgggaatgcagatgccaggttttgtgaagaacattatgacatatggagtgtttgtcgaa
ttcccacatggactgtacggcctggcacccaaagctgctatgtctgataagtttgtcaca
aacatcgaagatcattttgtggtgggccagacagtggttgccaaggttacaaacctggat
gaggaaaagaagcgagtattactgactctgaaagtgtctgaatgtgggtctggggaagag
gatgatgaaagtcttgcactcctgagccagtactgtggggaactggaatttgtcaggacc
ttgatgagcagcagagattctccagttgctgtcagtttaagtcgcctggctacagggcag
agactccagctggtagttagcagagtggagggtgatggcacaatatatttcacgggtaca
caggttaccaagctcactgttacagccagtcgctatcaccaggaaggggtgtctctgagc
ccaggacaacagtgcacagcagtcgtggtgtttgtagatctcctctcatccattgttcat
gtgtctgtccgtcaggagctgctaaatgctgatgtgaaaaagttgaaaggaatttcccag
catcctgctgtggtgcagtttgtgacacaggacgttgctgttgtttcactggctggcact
tcgaagctgcttctcgttccagtcacattccatctaaacgacacctttcacttcgactct
gagaaactctttgtgggacagaccatctctgtgttgctgcacacagctggagtagaacat
catgggatcccgctcgctgcccgaggacgcaagaaacaccgcagtgtcaagcgagagcgc
caaatgtcagaagaagaggatttgacacctgtggttcagcatgcactgtatgtcgggaat
gtagtaagtggaactgtgaaatccgtgcagccaaactgcctgctgatcaagttagaaggc
ggcgtgactggatttgttcacgtttcagaaatcgatgaccacgttcctgtcggctccttc
ccaacgacgaaactaaaagttggcaatgtcgaaacagcaaaggtcattggaggtagagaa
gtcaagtctcacagatttttgccaatcacgcacccgaacttttcgatgactataccggtg
ttaacactgcgaccaagcaagctgtcaggagactgtgagctcatgttccagagcgaggac
ttagcagaccagctgaaatcctacaaacccggccaagtgttaacgtgctatgtgtcgaag
tacaaccataccagaaaatgtctggttgttgaagtcactcctgtcatttctggaagtgta
gagctgctgctgatgtctcaaaaaatcaagcacttgaagtttcccaagaaacattttcaa
actggccgggccttaactgcgaaggtgatcggcccagacacaatgaacaactgtctcagc
ctctcactcacaggtttatgttctctggatgaaggttcgataacactgggcataatcaag
aaggtcactccacacttgggggtcaccatccagctcccttttggaaagaatggtcaagtg
gggctatgtgatatagcagattcatacaaagagtcacaatttgaggagctcaccccaggc
cacatagtcaggtgccgtgttatttcaaatgatgagcatgagttggcagtttctctcagg
aactcaagagtgtaccctgaaaatgagtcttcaataagtgacccagagattacatcggcc
aaggaccttcagaaggggcagctcctgagaggttatgtaaaggctgtcagagagtctgga
gtccttgtcagtctctcctcttcggtgttaggccgtgtcctatttgattacgtatcagat
cactttgtcaaggaccatggaatcttcatgagaaacatcccaaaaggaaagctggtgaca
gtcaaagtactgagtgtaaagggtgaagtggagctctcgctcctccctcaggacacagga
gctccagatgtgctgtcaaagtccggcttaccattgaaacaatccaaaatgctgagtaat
gcagaagggacagtctcaaaaaccttcaaacgcaagagaagaggttcagagagtgagcag
atttcctccaaaaaattgaaaacaagcaggaaacagaagaatttggaggaggcagagtgt
ggagtggaggtatactttcatgaggaggacagtgatactgaagttcaacagcagccgaat
cccagaaaaacccaggttcccaggctagaagtgccactcagctttgcttgggatgtgagt
ttaaacactatctctcctgtgactcggaaacgtgaagacatcagctcagacagtgaggaa
gacgagcctgaggactccaaggccaaggtgacgaagaaagagaaggaattggggaagtgg
cagatggaaaaagagctgacgaaggttgagcagcagctgatggaccccagtcgacaccca
cagtcagctgaggactttgaccgtctggtcctgagctcccccaacagctccattctctgg
acacagtacatggcattccacctgcacgcaactgagattgagaaggcacggactgtggca
gagagagccctgaaaaccatctccttcagagaggagcaggagaaattgaatgtctgggtt
gcactgctaaatctggagaatctctatggcacagaagagtcactgatgaaagtgtttgaa
cgtgctgttcagtacaatgagccgctgaaggtcttccagcagttggccagtatctacacc
aaatctgagaaatacaagcaagcagacagcctgtacaacaccatgctgaaacggttccgc
caagagagcactgtctggcttaattatgccaccttcctcctcaagcagggaaagactgac
tgtaccagtgctttactgcagagggcgctgaagtgtctgccccagaaagaacatgttgac
ataattgccaagtttgcacagctggagtttcgtctcggggacacagaacgggcgaaggca
atgtttgagagcacgctgaacaattaccccaaacgcacagacctgtggtcagtctatatc
gacctgatggtgaagcatggcaaccaggatgaaatcaggcatctcttcgaaagagtcata
cacctgaagcttgcaccaaagaagatgaagttcttcttcaaaaggtatcttgagtatgag
aagaaacatgggagtgaggagagagtacaggacgtgaaggagaaggcgctaaaatacgtt
gagtcaacgagcttgcctgtggacagctaa
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