Chiloscyllium punctatum (brownbanded bambooshark): 140463740
Help
Entry
140463740 CDS
T11285
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun04510
Focal adhesion
cpun04512
ECM-receptor interaction
cpun04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140463740 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
140463740 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
140463740 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cpun00535
]
140463740 (col9a1b)
Proteoglycans [BR:
cpun00535
]
Extracellular matrix (ECM) proteoglycans
Others
140463740 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
140463740
NCBI-ProteinID:
XP_072414179
LinkDB
All DBs
Position
3:106653933..106808819
Genome browser
AA seq
680 aa
AA seq
DB search
MESSDSKWGLLYLMLFLQLMRLSFTQVSPGDSSLPGPAGVPGVDGIDGDRGPDGSPGPPG
PKGDAGTRGSAGLVGPPGQDGLPGKEGSPGTPGQPGPKGEPGTVGPPGPSGEGEPGLPGP
PGPSGLPGELGRVGPPGDRGPPGLSGPPGPPGPKGLPALVHAESSDESLCPNACPPGLQG
YAGLPGMKGHKGVKGEAGEPGKQGHKGEEGEQGVPGDVGAQGPPGIQGPRGYAGMDGRKG
DMGLRGLDGEPGGIGPIGSPGDVGPQGPLGEPGPKGDRGRPGPRGITGSPGSKGEPGLPG
VDARDGIPGMPGSKGEAGKPGAPGEAGPRGLPGLPGSPGLQGAMGAKGDRGPAGLNGTMG
SPGKPGEQGPVGDLGEPGLVGPPGDRGLPGDVGPAGPPGPAGPIGDIGYPGLPGPAGLPG
AKGDRGAVGLSGGKGEQGPAGAEGIDGPKGEMGDQGNAGPKGSIGKPGEVGFRGKDGIRG
LPGVQGPHGAIGAQGLQGDRGLPGLPGRQGPPGKEPTDQHIRQVCMRVMQEHLAHLAASL
RRPETGIMGLPGRPGLPGPPGPAGENGFPGQPGPRGLTGLKGPAGITGYKGQKGEQGEKG
DRGFPGRGPRGLPGQQGLPGEPGKNSFGRDGRDGPRGLPGKSGQPGIPGPPGRAGTPGYC
ESSACTQALRAPPPENVKGP
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggagagctcggacagcaaatggggactcttgtatctaatgctttttctacagttaatg
cggctcagtttcactcaagtctcgccaggtgattcctctctcccaggtccggccggagtc
ccgggagtggatggcattgacggagaccgaggtccagatggatccccgggtccaccgggt
cccaaaggtgacgccggtactagaggctcggccgggttggtgggacccccgggacaagat
ggattaccaggcaaagagggatcaccaggaacccctggacaacctgggccaaagggtgaa
ccaggaacagtgggacctcctggaccttccggtgaaggtgaaccagggctacctggacct
cctggtccatctggacttccaggtgaacttggccgtgttggacctcccggtgatcgagga
cctccaggactgtctggaccaccaggcccacctggacccaagggacttccagcactggta
catgctgaaagcagtgacgagtcactgtgtcccaatgcatgccccccagggctacagggc
tatgctggacttccaggaatgaaggggcataaaggtgtgaaaggagaggctggtgaacca
ggcaaacaaggacacaagggtgaagaaggagaacagggagttcctggagatgtaggcgct
caaggcccaccaggtattcaaggtcctagaggttatgctggtatggatggacgaaagggt
gatatgggtcttcgtggattggatggcgaacctggtggaattggtcctattggttcacct
ggagatgtcggccctcaaggccctctgggtgagcctggccctaaaggtgatcgcggtcgc
cctggtcccaggggaattacagggtctccaggatcaaaaggagaaccaggattaccaggt
gttgatgcacgggatggtatacctgggatgcctggatcaaagggtgaagctggcaaacca
ggagctccaggtgaagccggacctcgaggtttgcctggtttgcctggttctccaggactt
cagggtgcaatgggagcgaagggtgatcgaggtccagctggattgaatggcactatggga
tctcctggtaaacctggtgaacagggaccagtcggtgatcttggagaaccaggtcttgtt
gggcctccgggtgaccgagggctgcctggtgatgttggtcctgcaggtccacctggccca
gctggtcccattggtgatattggctatcctggtcttccgggtccagctggtttgccaggt
gcaaaaggagatcggggtgctgtaggtttgtctggtggtaaaggtgaacaaggtcctgct
ggtgcagaaggtatcgatggtcccaagggtgaaatgggtgatcaaggaaacgctggtccc
aagggttctattggcaaacctggtgaggttggatttcgtggtaaagatgggattcgtgga
ctgccaggtgtacagggtccccatggtgctatcggagcacagggcctacaaggagatcgt
ggacttccgggcctacctgggagacagggtccacctggcaaggagccaacagaccaacac
attcgacaagtgtgcatgagagtaatgcaagaacacttagctcatttggctgccagcctg
aggagacctgaaactggtatcatgggtttgccaggacgtcctggactcccaggaccccca
ggaccagctggagaaaatggctttcctgggcaaccaggacctcgtggtcttactggccta
aaaggtccagctggtataactggttataaaggacaaaaaggtgaacaaggagagaaaggt
gatagaggatttcctggaagaggacccagggggttgccagggcagcaaggtctaccaggg
gaacccgggaaaaatagctttggtagagacggccgtgatggtcctagaggcttacctgga
aagagtggtcagcctggtatccctggtccacctggtcgtgcagggactcctggatactgt
gagtcctctgcctgcacacaagctttacgggcgccacctccagaaaatgtgaaaggacca
tga
DBGET
integrated database retrieval system
