Chiloscyllium punctatum (brownbanded bambooshark): 140464228
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Entry
140464228 CDS
T11285
Name
(RefSeq) putative cleavage and polyadenylation specificity factor subunit 4-like protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140464228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpun03021
]
140464228
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140464228
Transcription machinery [BR:
cpun03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140464228
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140464228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_12
zf-CCCH_3
zf-CCCH_2
zf-CCCH_PARP12
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
140464228
NCBI-ProteinID:
XP_072415172
LinkDB
All DBs
Position
39:44489177..44505712
Genome browser
AA seq
197 aa
AA seq
DB search
MQELVAGLQMMRFDFEIVLEQQRGIMDLPFSGMDRSSSAVCELFIKGKCLKDQMCPFRHT
CGDKNVVCKHWLRSLCKKGDQCEFLHEYDETKMPRCYFYSKYGECNKQECPFLHLNSRMQ
IPDCPWYDRGFCKYGPLCKNKHTRKIICENYLAGYCPEGTACKFSHPGNEFTDWNSDLKE
MSEIPLFTKDSTAETKV
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagttggtggctggtttacagatgatgagatttgattttgaaattgttctggag
caacagagaggaattatggatttgccattttctggcatggatagatctagttcagctgtt
tgtgagcttttcattaaaggtaaatgcttaaaagatcaaatgtgcccatttcgacacacg
tgtggtgacaagaatgtcgtatgcaaacactggctccgaagcctgtgtaaaaaaggagac
cagtgtgagtttttgcatgagtatgatgagactaagatgccacgatgctacttctattca
aaatatggtgaatgcaataaacaagagtgtcctttcctacacctcaattcacgaatgcaa
attccagactgcccctggtatgaccgagggttctgtaaatatggcccactgtgcaaaaac
aaacacaccaggaagataatctgtgagaattatctggctggttactgccctgaaggaaca
gcatgtaaattttcacatccaggtaatgaatttactgattggaacagtgacctaaaggaa
atgtctgagattccacttttcacaaaagacagcactgcggagacaaaggtttaa
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