Chiloscyllium punctatum (brownbanded bambooshark): 140464374
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Entry
140464374 CDS
T11285
Symbol
cpsf4
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140464374 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpun03021
]
140464374 (cpsf4)
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140464374 (cpsf4)
Transcription machinery [BR:
cpun03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140464374 (cpsf4)
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140464374 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-C3H1
zf-CCHC_3
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
140464374
NCBI-ProteinID:
XP_072415459
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All DBs
Position
40:complement(15382733..15400576)
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AA seq
273 aa
AA seq
DB search
MQELISNVEHIRFELEIAVGAAAGGPRPLPFPGMDKSGAAVCEFFLRASCGKGGMCPFRH
ISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPES
KIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTGVDQ
PPLQQQQQILQKQSLTPFLQRSSSLVQIPSTNIIVGQQKSNTQSSGSVQQSQFQTLSNRG
PRPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctcatttccaatgtggagcacatcaggttcgagctggagatcgcggtggga
gcagcagctggggggcccaggccgctcccgttccccggaatggacaaatctggggcagcg
gtctgtgaattctttctgagagcatcatgtggaaagggtgggatgtgcccttttcgtcac
atcagcggtgagaagacagtggtgtgcaaacactggctgaggggcctctgcaagaaagga
gatcagtgtgaattcttacatgagtatgacatgaccaagatgcctgagtgctatttctat
tccaaatttggagaatgtagtaataaggaatgtccatttctacacattgaccctgagtcc
aaaatcaaagactgcccctggtatgaccgaggattttgtaaacatggtcccctgtgcagg
caccgacacacacggcgagtcatctgtgttaactatctggtaggattctgtcccgaaggc
cccagctgtaaatttatgcatcctcgttttgagctgccaatgggtactggtgttgaccaa
ccaccgttacagcaacagcaacagatacttcaaaagcagagtcttactccgtttcttcag
cggtcatcctcactggtacagattcctagcaccaacataattgtagggcagcagaagtca
aacacacaatcaagtggatcagtgcaacaatctcaatttcagacattgtcgaatcgaggc
cctagaccattagagcaagtcacgtgttataagtgtggtgagaaaggacattatgctaac
cgatgtaccaaaggacacttggcatttcttagcggtcagtag
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