Chiloscyllium punctatum (brownbanded bambooshark): 140464539
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Entry
140464539 CDS
T11285
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
140464539 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpun04121
]
140464539 (slx4)
03400 DNA repair and recombination proteins [BR:
cpun03400
]
140464539 (slx4)
Ubiquitin system [BR:
cpun04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
140464539 (slx4)
DNA repair and recombination proteins [BR:
cpun03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
140464539 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
ZNHIT3_C
Motif
Other DBs
NCBI-GeneID:
140464539
NCBI-ProteinID:
XP_072415835
LinkDB
All DBs
Position
40:45013538..45044753
Genome browser
AA seq
1875 aa
AA seq
DB search
MDESDDDFVELCKTTSRCPVEAEGKKCKSVCWSRTNSFVAKTKLREKQILNSEASCFNES
KTNSAGTAEWKNSRTTECQAHDLPAPSCSRQVAIKDVPVLQPSKPETLEGSGTVKDGLPD
GMWIHRLSHSAIMKKTVNKGLGVKERVLGNMQRFRRKEPERLRHSNDVKMLSASTIQEDE
KNEEFCSLDTNEKNGQTDGHSTATSLPAAFISEEDAVADDCHRLADSDLALAWTIQQELG
ATEAYTLEDNGLFFCVICQKDLSNMNSARRTQHINRCLDEGEQKTATAVSKNIPSVPECP
ICGKHFKSFKSRAIHLKRCAIELEVPPQLLLQAVQRQNSQCPESCTYSTSLQPSGLKRKS
STRENEPLKKCKTTSKPPLDEDTMVAMALSASLMEQQKQEEERQSVTVHADNFSLAKIMV
ASDKRCRKKRKDDLPPLLLVQDPEMALQRVQNSLAALLSEEMEISSTPPLPASTFCIGGI
LSHVCHVRPGITEQESLWCRSALFGSSNWDSALFYAANLVPPITPLKQGHDQEYLAYKEQ
MSSSVVPDRALVRPSLKLIDQHAASADVGSKTETADVCLASTQQDRTFFDLMDLAGEGMT
LTQWNYGVNHEQDNEITGRNIKDTLLDDITPSGFVPARSERRCGNSLHHAQQLKKLSEDL
AGLVNNPHLSDVQFQVDSGEIVYAHQFMLYARSPHLVQLVHDEGFLVEEDGAAMTRRFLL
PEVTTDGVCAFLQYLYTASVTVSPSVISELQTLANRFAVNELVEICKAFSNEVESHEGCS
ENDPSTKIDENYGTREDNLQDLLRSMWMGEPEDPALDPQSTEDDDKFSEKVDDEELEELH
EFAATQRKIERTSLQTQEIEGVEQKNSVENEEKLNGYGENERSVEGPRTKSEIVENCETS
ITERETRSDSSCPSKNLEASTMQEPSQKGETFHLKESQNHSFRPDLNLNTSDDCLFSETD
LSVESQQDEIKYGLDVFEEDKTLASKSSHSSSSFANCSINCLSPMGEIECPSACPSLPDL
PLVGSSPLETYANVQSPQERLSLVSAVISSLGAAQHGNSSEIMSCDSVISKGQLNLADKR
CDNAPSLQEHSAHESLKYFEWLSNQKPPSTGTPYLQRLSQSTSEKPQGNQSPTISIDSSQ
SPSENKSNNTLLIISSDEEMDITEKMFPLCSESTQLMPLPNDKCSSIESNPGVKQFIIKS
EKVLMSKIDAEQGNVNVSGITSKYLDEVHNNSISEFSIGDVVKKVANHENQVKDSENELT
LQLSSDGEQSNEDRTVEGSWLVPATPLSTGSRNCSALTANSCSLQSQGVRRDKLFEKKIE
QEVAVLKSVNVGQGKPQAINISEEGFRDDQGIVSELDCSAEKNSVNQWSLPSSPIPSTQR
SDCIVELGSEETSFTHSPSQLEGTLPLSFSSEEKESSDKSVLEIEDTEEEMFEDGPPIPS
DEFWNSEGSPQLEVEDFHGEAIFHKIVNPVKNKDGHYHVTNADSKNSTPLSEKSKPRLTF
PSTEIDQRSKADAKHLPNRPHPSSFDSNIWTEGEFPEVLSGLSQKLSVLQKESICNRQHV
GEHKTPDPVNRKKAQLPLAAITPEPPYSTMATPHLKRELRKFGVRPLPKKKMILKLKEIY
QYTHQVVQPGPDTQSKQHISSSQPCTWKTIPDLTSKLKVGTNKLSQPVSSARNQQKSHSK
KQSQSVSAETSNRAMKGHLKATSKRKVKSLVLQSDGLEAKSPLKAVASDVANQLPSSQSS
SSSWSEDSFESQRRLTNECDDILSTDSDDDKDDGITPSQAVIREADTTEAIRQYILSDLS
LYSEIVQYKPFELSDLHQKLKENGIKVSKGKLLEFLDAQCITFTTARARKEMLKRRKQGI
EKQRKGKHSQCHRKR
NT seq
5628 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatcagatgatgattttgttgaactctgcaagacaacatctagatgcccagtt
gaagctgaagggaagaaatgcaaatcagtctgctggagccgcaccaattcgtttgtagca
aagacaaagttaagagagaaacaaatcttgaacagtgaagcaagttgttttaatgagagc
aaaaccaacagtgctggaacagcagagtggaaaaatagtaggacaactgaatgtcaggca
catgatctacctgccccttcatgcagcagacaagtggcaataaaagatgtccctgtgctt
cagccttcaaagcctgagactttagagggctctgggactgttaaggatggcctaccagac
ggtatgtggatccataggctcagccattcagcaattatgaagaaaactgttaacaaaggc
ctaggtgtgaaagaacgagttttgggaaatatgcagagatttaggagaaaggaacctgaa
cgtttgcgacatagcaatgatgtgaaaatgctgtcagcttctaccatccaagaggatgag
aagaatgaagaattctgttccttggatacaaacgaaaaaaatggtcaaacagacggtcat
tcaactgcaacatcccttcctgcagcatttatttctgaagaagatgctgtagctgatgac
tgccataggttggctgacagtgatctggccttggcgtggacaatacaacaggagttggga
gcaactgaggcctatactcttgaagacaatgggctctttttttgtgtaatctgtcagaag
gatctttccaacatgaactctgctcgacgcactcagcacatcaacagatgcttagatgaa
ggagaacagaaaacagctacagcagtctcgaaaaacatcccttcagttcctgaatgtccg
atctgtggaaaacattttaaaagcttcaagagtcgagcgattcacctcaaacgctgtgcc
attgaattggaggttccaccacagttattattgcaggcagttcaaagacaaaactcccag
tgtcctgaaagctgcacttactcaacaagccttcagccaagtggattaaaaagaaaaagt
tcaacaagagaaaatgaaccgctaaagaaatgcaagaccaccagtaagccaccattggat
gaggatacaatggttgccatggcattatctgcatctttgatggaacagcaaaaacaggag
gaggagaggcaaagtgtaaccgtgcatgctgataacttcagccttgccaaaattatggta
gcatcagataagagatgtcgaaagaagaggaaggatgaccttcctccattgttattggtc
caggaccctgagatggcactccaaagggtacaaaacagtttggcagcactgttgtctgag
gaaatggaaatatctagcacacctccattaccagcaagcactttctgcataggcggaata
ctgagccacgtctgtcatgtacgtccagggataactgagcaagaaagtctgtggtgtcgc
agtgctttgtttggatccagtaattgggactctgcactcttttatgcagctaacttggtt
ccacctataacaccattgaagcagggacatgaccaagaatatctggcttataaggaacag
atgtcatcttcagtggtgcccgacagagcccttgtaagaccatccttaaagttgatcgat
caacatgctgcttcagctgatgttggaagtaagactgagactgcagatgtgtgcttagct
agcactcagcaggatcggacattctttgacttgatggatttagctggtgagggaatgaca
ttgacacagtggaattatggggttaaccatgaacaagacaatgaaataacaggaagaaac
ataaaggacactttattggatgatattacacctagtggatttgtcccagctcggagtgag
agaaggtgtggaaatagtttgcaccatgcacagcaactgaagaaattgagtgaagacctt
gcaggactggtgaataatccccacctgagtgacgtgcagtttcaggtggacagcggtgag
attgtgtacgctcaccagtttatgttgtatgctcgctctccacatcttgtccaacttgtg
catgatgaaggatttctggtggaagaggatggtgctgctatgactcgcagattcttgctt
cctgaggttacaacagatggagtttgtgctttccttcaatatctatacactgctagtgta
actgtgtctcccagtgtgatttcagagcttcaaactcttgctaacagattcgctgtgaat
gagttggtagagatctgcaaagccttctcaaatgaagttgaatctcatgaaggttgttca
gaaaacgatccttccactaaaatagatgaaaactatggaactcgagaagacaatctccag
gaccttctgaggtccatgtggatgggcgaacccgaggaccctgctttggaccctcaatcc
acagaggatgatgataagttcagtgagaaagttgatgatgaggagttagaagaacttcat
gagtttgctgccactcagagaaaaattgagagaacctcccttcagactcaagagattgag
ggagttgaacagaagaatagtgtggaaaatgaagaaaaactgaatgggtatggagaaaat
gaacggagtgtggaaggtccaagaactaaaagtgaaatagttgaaaattgtgagacttcc
ataactgaaagagaaactagatctgactcatcctgtccttccaagaatctggaagcatcc
acgatgcaagaaccttctcaaaagggtgaaacattccacctaaaagaatctcagaaccat
agcttcagacctgatttgaatttaaataccagtgatgactgtctcttttcagaaacggat
ttgtcagtagaatcacagcaagatgaaataaagtatggtttagatgtctttgaagaagat
aagacgttggcttcaaagagcagtcattcatcgagctcctttgccaactgtagcattaac
tgtctttcaccgatgggtgagattgaatgtccctctgcttgcccgagtttgccggacctg
cctttggttggatcatcaccgttggaaacttacgcaaatgtgcaatctccacaggaacgc
ctgtctttggtttcagcagtaatctcgtcccttggagctgcacagcatggaaattcctct
gaaataatgtcttgtgactcagtgatttcaaaaggacaactgaatctagcagacaaaaga
tgtgataatgcaccaagtctgcaggaacacagtgctcatgaatctttaaaatacttcgaa
tggttatcaaaccaaaaacccccttcaacaggtactccttatttgcagaggctgtctcaa
agtaccagtgaaaagccacagggcaatcagtcaccaactattagcattgactccagtcag
tctccatcagagaataaatccaataataccctgttgattatatcctcagatgaggaaatg
gacataactgaaaaaatgtttccactttgttctgaaagcacacaattaatgcctttaccc
aacgataaatgttctagtattgaatcaaacccaggtgttaaacaattcattattaaatct
gaaaaggtgttgatgtctaagattgatgctgaacagggaaacgtcaacgtttctggaatt
acatccaaatatttggatgaggtacataacaatagcatttcagagttttccattggtgat
gttgttaaaaaggtcgccaaccatgaaaaccaagttaaggatagtgaaaatgagctgact
ctacagctaagcagtgatggtgaacagagtaatgaagaccgtacagtggaagggtcatgg
ctggtacctgcaactccactttcaacaggatctagaaactgttctgcattgactgcaaat
tcttgctccctacaaagtcagggtgttagaagggacaagctatttgagaagaaaatagaa
caggaggttgcagtattaaaatctgttaatgtgggacagggaaaaccacaagcaattaac
atatcagaagaaggttttagagatgaccaaggaatagttagtgagttggattgttctgca
gaaaagaattctgtcaatcagtggtcactgccatcatctccaattccttccacacaaagg
tctgattgtattgttgaattaggaagtgaggaaacttcatttacccattctccttcacag
ctagaagggacattgccactgtcattctcttctgaagagaaggaatcatcagacaagtct
gtgctggagattgaagacaccgaagaggagatgtttgaagatgggccgccaataccatct
gatgagttttggaattctgaaggtagtcctcaacttgaagtggaagattttcatggtgag
gcaatatttcacaagatagtcaatccagtgaagaataaagatggacactatcatgtcaca
aatgcagacagtaagaatagcacacccctctcagaaaaatcaaagcccaggctgaccttt
ccatctactgaaatagatcagagaagcaaagctgatgcaaaacacctaccaaacagacca
catcccagttcatttgattctaatatttggactgaaggtgaatttcctgaagtcctctct
ggattatcccaaaagttatctgtacttcagaaagaaagcatttgtaacaggcaacatgtt
ggagagcacaaaactccagaccctgtcaaccgaaagaaagctcaacttccattggctgcc
atcactcctgaaccaccttattcaacaatggccaccccacacctaaagagagaactgagg
aagtttggtgttcggcctctgccaaagaagaaaatgattctgaaattaaaagagatttat
caatatacacatcaagttgttcagcctggtcctgacacccaatcgaagcagcacatatca
tcttcacagccttgcacctggaaaacaatcccagatttaactagcaaactaaaagtgggc
accaacaaactgtcccaaccagtttcatcagcaagaaaccaacagaaatcacactccaaa
aaacagtcacaatctgtttcagcagaaaccagcaaccgagcaatgaaaggtcaccttaaa
gccacttctaaaagaaaagtgaaaagcctggtgcttcagtcagatgggctagaagccaaa
tcacctttgaaagctgttgcttctgatgtggctaaccagctgccttcttctcaaagctcc
tcttcatcatggagtgaggattcctttgaatcacaaaggcgattgactaatgaatgtgac
gacatcttaagcacagattcggatgatgataaggacgatggaatcactccatcacaggca
gtaatccgtgaagcagatacaacagaggccatacgccaatatattctgtcagacttatct
ctgtatagtgaaattgtgcagtacaagccctttgaactgtcagacctccaccagaagctt
aaggaaaatgggataaaggtttccaaagggaaactgctggaatttcttgatgcccagtgt
atcacttttaccacagctagagcaaggaaggaaatgttgaaaaggagaaagcagggcatt
gaaaaacagcgaaagggaaagcacagtcagtgccacaggaagcggtaa
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