Chiloscyllium punctatum (brownbanded bambooshark): 140465929
Help
Entry
140465929 CDS
T11285
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cpun
Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140465929 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpun03041
]
140465929 (ddx42)
Enzymes [BR:
cpun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140465929 (ddx42)
Spliceosome [BR:
cpun03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140465929 (ddx42)
Complex B
140465929 (ddx42)
Complex C
U2 SnRNP specific factors
140465929 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140465929
NCBI-ProteinID:
XP_072418005
LinkDB
All DBs
Position
42:45904014..45986580
Genome browser
AA seq
954 aa
AA seq
DB search
MNWNKGGGGAKRGFGFGGFAITPGKKEEPKLPKAAHSVFGALGPSGGYGKTQPAQTPCFY
KVGSKRPNFDEENAYFEDDDEDDSSSNVDLPYIPAENSPTRQQFVSKADESEDSEEDPLD
AYMAEVEDQAAKDIKRLDEKEFEKKNAKGIRDDIEEEDDHEAYFRYMAENPSAGVIQEEE
DDIEYDSDGNPIPPLKKVIDPLPPIDHSEIEYQPFEKNFYIEHEDLAKLSLIPLAELRQK
LNLRVSGADPPKPCSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAK
TGSGKTAAFIWPMLIHIMDQRELELGDGPIGVIVCPTRELCQQIHSECRKFGKAYNLRSV
AVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFE
YQVRSIANHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDITQIVEIL
VAGPDKWNWLTRRLVELSSRGSVLIFVTKKANSEELAANLNQEGYTVGLLHGDMDQSERN
KVISDFKKKTIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVA
YTLMTSKDSNFAGDLVRNLEGANQYVSKELLDLAMQNPWFRKSRYKAGKGKRMNIGGGGL
GYRERPGLGSDSSDRTSSSVLSNYEAYKPSTGAMGDRMSAMKAAFQSQYKSHFVAATGSA
PKITGSAAGTSNWTSAGSLSIIPTCPLGNPVTNQLQVPSSNSGSSARNKDSNSRPAEVKS
NRLVDGSSSRFESSSRHSDNFGRHSDGGSRYSDSGSRHGDSSGRHSVSKYNDRGGDGRHS
DRGSERHSDRNSERHVDRSDSRHSDRRSDSRHGDRHGESRSSDSRHSESRSSSQNRSGGD
SGSMNETGNSGENRSGNESRNGDSRSGNRTNSAENDGFAVPEPPPRKKRSRWDN
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggaggtggtggagcaaagaggggatttggttttggtggctttgcc
attacgcctggaaagaaagaagaaccaaagctgccaaaggcggcacactctgtatttggt
gcactgggcccatcaggaggatatggaaaaacacagccagctcaaacaccctgtttctat
aaagtgggctcgaaacggccaaacttcgatgaagaaaatgcgtactttgaagacgatgac
gaagatgacagttcatcaaatgtcgacttgccttacatccctgcagaaaattctccaact
agacaacagtttgtttctaaagctgatgagtctgaagacagtgaagaagatcctttggat
gcatacatggctgaagtggaggaccaggctgccaaagatataaaaaggttggatgaaaag
gagtttgaaaagaaaaatgcaaagggtataagggatgacattgaagaggaagatgaccat
gaagcctattttcggtacatggctgaaaatccaagtgctggtgtgattcaggaggaggaa
gatgatattgaatatgacagtgatggtaatcctattcctccactaaaaaaagtcattgat
ccattgcctcctattgaccattctgagatcgagtaccagccatttgagaagaatttctac
attgaacatgaagacttggcgaaactttcactcataccattagctgaactccggcagaaa
ctgaatttgagagtctctggagctgaccccccaaaaccttgcagtagttttgctcacttt
ggctttgatgagcaattaatgcatcaaatccgaaagtcagaatatacacaaccaacgcca
atacagtgtcagggcgtccccattgcgctgagtggcagagacatgatcggaattgccaaa
actgggagtggtaaaaccgcagcatttatctggccaatgttgattcacatcatggaccag
agggagctggagcttggggatgggcctattggtgtgattgtttgtccaaccagagaactt
tgtcaacagatccattctgaatgtcggaagtttggaaaagcctacaacctgaggtcagtg
gctgtgtatggtggaggcagcatgtgggaacaagcaaaggctcttcaagaaggcgcagag
attgtcgtttgcacaccgggccgattaatagaccacgtgaaaaagaaagccaccaatctc
cagagagtgacctatttggtgtttgatgaagctgacagaatgtttgacatgggctttgaa
tatcaggtccgttcaatagcaaatcatgtccgtccagacagacagactctgttgttcagt
gctactttccggaagaaaattgagaggctggctcgtgacattctcgttgaccctattcga
gttgtgcagggagacataggagaggccaacgaggatattactcagatcgtggagattctt
gtagctggtcctgacaagtggaactggctcacgaggcggctggtagagttgtcatcgaga
ggaagtgttttgatttttgtgaccaagaaagctaatagtgaagagcttgctgccaattta
aatcaggagggatacactgttgggctgttacatggtgacatggatcagagtgaaagaaac
aaagtaatttctgacttcaagaagaagacaattcctgttcttgtggctacagatgtagca
gcacgtggtttggatattccgtccattaaaacagtgattaattatgatgtggctcgtgat
attgatacacacacacaccgaattgggcgtactggcagagcaggagagaaaggtgttgca
tacacgttgatgacaagcaaagacagtaatttcgctggagatcttgttcgcaatttggaa
ggagccaaccagtatgtttccaaagaattattggacctcgcaatgcagaacccatggttt
cgaaagtctcgttacaaagctgggaaagggaagaggatgaatatcggaggaggaggatta
ggctacagagagcgtcctgggctgggctcagatagctctgacagaacatcaagcagtgtg
ctgtctaactatgaagcatacaagccatctacaggagcaatgggcgatagaatgtcagct
atgaaagcagcatttcagtcacaatacaaatcgcactttgttgcagccactggtagtgct
cctaagatcacaggttctgctgctggaactagcaactggacaagtgctgggagcctcagt
attattcctacttgccctctgggcaatccagtcaccaaccagctgcaggttcccagcagt
aacagtggaagtagcgctcggaataaagacagcaacagtcgtcctgctgaggtcaagagc
aatcgtcttgttgatggcagctctagccgttttgaaagcagcagtcgtcatagtgacaac
tttggtcgtcatagcgatggtggcagccgttacagtgatagcggcagtcgtcatggtgat
tccagcggccgccattctgtcagcaagtacaacgatcgcggaggtgacggcaggcacagt
gaccggggcagtgagaggcatagtgatcggaacagtgaacggcatgttgaccgcagtgac
agccgacacagcgaccgacgcagcgacagtcggcatggtgacaggcatggtgagagtcga
agtagtgacagtcggcatagtgagtccaggagttccagccaaaaccgaagtggtggggac
agcgggagcatgaatgagaccgggaatagtggagagaacaggagcggcaatgaaagcagg
aatggagacagcagaagtggcaatagaaccaattctgctgagaatgatggctttgctgtg
ccagaaccacctcccagaaagaagaggagcagatgggacaattaa
DBGET
integrated database retrieval system
