Chiloscyllium punctatum (brownbanded bambooshark): 140467010
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Entry
140467010 CDS
T11285
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03013
Nucleocytoplasmic transport
cpun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140467010 (upf2)
03015 mRNA surveillance pathway
140467010 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140467010 (upf2)
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140467010 (upf2)
mRNA cycle factors
P-body specific factors
140467010 (upf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
140467010
NCBI-ProteinID:
XP_072419127
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All DBs
Position
44
Genome browser
AA seq
1294 aa
AA seq
DB search
MNEREKKGKRPSGEHKKSVSMEEKDATVFSNETRGIKDKESTDRRLVSSREKGRDELKAS
SRRETIKAAEEKKKRQEDEKRKKEDEKRKKKEEEKLKAEEEQRKKEEEEKKKLEEEERKK
QEEEDKRQREEAAAKQREMEEAYQLHQEAWERHQTRLELRSKNQIAHENRPEESFFTRLD
SSLKKNTAFVKKLRTITEQQRDTLSSDFNMLNLSKYIAEAVASIVEAKLKLSDVNCAVHL
CCLFHLRYADFSPLLLQGWRKHFEARKEEKTPNISKLRTDMRFIAELTICGIFTDKEGLS
LIYEQLKNIICADRETHTHVSVIISFCRHCGDDVASLVTRKMKLASEKYNLSFPPSEIIS
CEKQQPFMNLLREYFTSLTKHLKKDHRELQNLERQNRRILHSKGELSEDRHKQYEEFATS
YQKLLANTHSLADLLDENMPELPQDKTAQEEHGTGIDIFTPGKPGEYDLDGGIWEDEDAR
NFYENLIDLKAFVPAILFKDNEKNSQNKDSSKEDSKDSKDGKESKELVATEELELELENL
DINDEILDEEGTEETEDLSQKLLEEHEQDEEEASTGSHLKLIVDAFLQQLPNCVNRDLID
KAAMDFCMNMNTKANRRKLVRALFTVPRQRLDLLPFYARLVGTLYPCMTDVAEDLCAMLK
GDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFLKNDSLHCLKMLLADFSHHHIEMACT
LLETTGRFLFRSPDSHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPVEKTVR
KKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLAWHDPEVKEYVINCMINIWNVKYNSIH
CVANLLAGLVPYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSVKFLGELYNYRMVE
SAVIFRILYSFITFGVSADGSATPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCF
LVYFQRYIWWKKSLDVWTKDHPFPIDVDYMISDILELLRPKMKFCGSLEEAIKQVQELER
EFLIKLGLVIDGKDSKSDKMSGLGEGEENQDDDDDDEEEEGGAETEEQSGNESEMNEHEE
EDASENEDDEEEEEENTDYLTDSNKENETDEDNNEVMIKGGGLKHLPCAEDEEFIQALDK
MMLENLQQRSGESVKVHQLDVAIPLQLKSQLKKGPPPQGGGEGDSENSETMQFVMLTRRG
NKQQFKILNVPMNSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQR
PAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaagggagaaaaaaggcaaaaggccatcgggagagcacaagaagtctgtgagc
atggaagaaaaagatgccacagttttcagcaatgagaccagaggcattaaagacaaagaa
tctactgacagaaggctcgtctctagtagggagaaagggcgggatgaacttaaagccagt
agcagaagggaaaccataaaagcagccgaggagaaaaagaagaggcaagaggatgaaaag
cgcaaaaaggaggatgagaaacgaaagaaaaaggaagaggagaagttaaaagcagaggaa
gaacaaaggaagaaggaagaggaagaaaagaagaaactagaagaggaggaaaggaagaaa
caggaggaggaggataaaaggcagagagaagaagcagcagctaagcagagagagatggag
gaagcatatcagttgcatcaagaggcctgggaacgtcatcaaacaagattagaactccgt
agtaagaatcagatagcgcatgagaaccgtccagaggagagtttctttaccagactggac
tcgagtctaaagaaaaatacagcatttgtcaagaagctccgaactattactgagcagcaa
agagacacactttccagcgatttcaatatgctcaacttgagcaaatatattgcagaagct
gttgcatccatagtagaagccaaactgaaattatctgatgtgaactgtgctgttcacctt
tgctgcctgtttcacttgcgatacgctgacttttcaccattgctcctacaaggctggcga
aagcactttgaagccaggaaggaagaaaaaactccaaacattagcaagctgaggactgac
atgcgcttcattgcagaactgaccatttgtggaatcttcactgacaaagaaggcttgtca
ctcatctatgagcaactgaagaatatcatttgtgccgatcgtgaaactcacactcatgtc
tctgtgattatcagcttttgtcgccactgtggagatgatgtggccagtctggtgaccagg
aagatgaagcttgcttcagagaaatacaacctgagcttccctcccagtgagatcatcagc
tgtgagaagcagcagcccttcatgaacctgttgagggagtactttacctctctgaccaaa
catcttaaaaaagatcatcgtgaattacagaatctggagagacagaacaggcgaatttta
cattcaaaaggagaactgagtgaagaccggcacaagcagtatgaggaatttgctacctcc
tatcagaagctgttagcgaacacacacagcctggctgacttgttggatgagaacatgcct
gaacttccccaggataaaactgcccaggaagaacatggcactggcatagacatcttcaca
ccagggaagcctggagaatatgacctcgatggaggaatttgggaggatgaagatgcacgc
aacttctatgaaaacctaattgacctgaaagcatttgtacctgccatattgtttaaagat
aatgagaagaactcgcagaacaaagattcgagtaaagaagattcaaaagattccaaagat
gggaaagaatccaaagagttggttgctacagaggaattggaactagaactagagaatctg
gacattaatgatgaaatattagatgaagaaggaacagaagaaacagaagacctcagtcaa
aaactgctagaggagcatgagcaagatgaagaagaagccagcactggttctcatctgaaa
ctaatcgtggatgctttcctacagcagctgcctaactgtgtcaaccgggaccttatagac
aaggctgcaatggatttctgcatgaacatgaatacgaaagccaatcgaaggaagttggtc
cgagccctgttcactgtgcctcggcagaggttggacttacttccattttatgcccgtttg
gttggcactttatatccatgtatgacggatgtggcagaagacctttgcgccatgttaaaa
ggagacttcagattccatgtcaggaagaaggatcagatcaatattgaaactaaaaacaaa
actgtacggttcatcggagaattaacaaagtttaaaatgttcttgaagaacgactcactt
cattgtctaaagatgctcttggctgatttttcccaccaccatattgaaatggcctgcaca
ctcctggagacaactggtcgttttcttttccggtcacctgattcccatttgaggacaagt
gttcttttggagcaaatgatgcgcaagaaacaagcaatgcatttagatgctcgttatgtt
acaatggtggaaaatgcatactattactgtaatccaccccctgtcgagaaaacagtgagg
aagaagcgccctccccttcaagaatatatccgcaaacttctctacaaggacttgtccaag
gtcacgactgaaaaggtgttgagacagatgcggaaattggcatggcatgatccagaggtg
aaggaatatgttattaattgcatgatcaacatctggaatgtcaaatataacagtattcac
tgtgttgctaacctattggcgggtttagtgccataccaagaagatgtgggaattcacgtt
gtggatggagtgctggaagacatccgtctgggaatggaggtcaatcaacccaagttcaac
cagaggcgtattagcagtgttaagttccttggggaattgtacaattacaggatggtggaa
tctgcggtcatcttccgaattttgtattcctttattacatttggtgtaagcgctgatggc
agtgcgacacctctggatccaccagagcatttattccgtattcgactagtttgtacactg
ttggacacttgtgggcagtactttgacagaggctccagcaaacgaaagttggactgtttt
cttgtatattttcagcgttatatctggtggaagaagagtttagatgtgtggacgaaagat
caccctttccctattgatgtcgactatatgattagtgacatacttgagctgcttcgacca
aagatgaaattctgtggctcccttgaagaggccataaaacaggttcaggaactcgaacgc
gagttcttgattaaactaggtcttgtaattgatgggaaagattccaagtcggacaaaatg
tctggtctgggggaaggggaagaaaatcaggatgatgatgacgatgatgaagaggaagag
ggtggagcagaaacagaggaacagtctgggaatgaaagtgaaatgaatgaacatgaagaa
gaggatgcttctgagaatgaagatgatgaagaggaggaggaggaaaatacagattacttg
actgactccaataaggaaaatgaaactgatgaggacaacaatgaggtgatgatcaagggc
ggaggcttaaagcatcttccttgtgcagaagatgaagaattcattcaggcattggataaa
atgatgctcgaaaatctgcagcagcgatctggcgagtctgtcaaagtgcaccagttagac
gtggctattccactgcaactaaaaagccaactgaagaaaggtcctccaccccaaggagga
ggagaaggcgattctgaaaattcagaaaccatgcagtttgtgatgctcaccagaagaggg
aacaaacaacagtttaaaatactgaacgtaccaatgaattcgcaacttgctgcaaatcac
tggaatcagcaacaggcagaacaagaagaaagaatgcgtatgaagaagctgacactcgat
attaatgaacggcaagaacaggaagattaccaggagatgttacaatccctggcacagcgt
ccagctccagcaaataccaatcgtgagcgtcgaccgcggtatcagcatccgaaaggagca
ccaaatgctgatctcatcttcaagacaggggggaggcgacgttga
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