Chiloscyllium punctatum (brownbanded bambooshark): 140468037
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Entry
140468037 CDS
T11285
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140468037 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140468037 (xab2)
03041 Spliceosome [BR:
cpun03041
]
140468037 (xab2)
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140468037 (xab2)
Spliceosome [BR:
cpun03041
]
Complex B
Other components
Prp19-related factors
140468037 (xab2)
Complex C
140468037 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_16
ARM_TT21_C
ARM_TT21
TPR_1
RPN7
NRDE-2
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
140468037
NCBI-ProteinID:
XP_072420310
LinkDB
All DBs
Position
46:complement(50576302..50625289)
Genome browser
AA seq
849 aa
AA seq
DB search
MNGSTQKHDVIFEEDDLPYEEEIIRNPYSVKCWIRYIEFKQSAPKHVVNMIYERALKELP
GSYKLWYNYLKQRRKQVKGKCITDPAFEEVNNCHERALVFMHKMPRIWLDYCQFLVDQCK
VTRTRRTFDRALRALPVTQHYRIWPMYLKFVRLFPLPETAIRVYRRYLKLSPENAEEYIV
YLRSIDRLDEAAVRLAGIVNDESFVSKEGKSNYQLWHELCHLISTNPDKVKSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQAEEDDIDLELRLARFEQLINRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPREIINTYTEAVQTVDPLKATGKPHSLWVSFAKFYEENSQIRDARTIFEKATKVN
FKHVDDLASVWCEYGEMELRHENYDEALQLLRRATAVPAKKAEYFDSTEPVQSRVYKSLK
VWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGV
ALFKWPNVFDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERATKAVEPLEQYEMYNIYIKRAAEIYGVTHTRGIYEKAIEVLPDEHAR
DMCLRFADMECKLGEIDRARSIYSYCSQLCDPRITPSFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTNATGTVSDLAPGQSGMDDMKLLEQKAQQLAEEAER
EKPKPKDKILFVRSDASRSELAELTKQANPDEIDIDDDDDDEEGDEEPDEVPLEQKTVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgaacggctccacgcagaagcacgatgttatatttgaagaagatgatctgccatatgaa
gaggagataattcgcaatccttactctgttaaatgttggatccgctacatagagttcaaa
cagtctgcacccaaacatgtggtgaatatgatctatgagcgagcactcaaagaacttcct
ggcagttacaaattgtggtacaattacctgaaacagaggcggaaacaggtgaagggaaaa
tgtatcacagaccctgcatttgaggaggttaacaactgccatgagcgagccctggtcttc
atgcataagatgccacgtatttggctggactactgtcagttcctggtcgatcagtgtaag
gtaacgagaactcgtcgaaccttcgatagggctctccgtgccctccctgtcactcaacat
tatcgcatctggcctatgtacctgaagtttgttcgtttgtttcccttgccggagactgca
atcagagtctataggcgctacctgaagctgtcccctgagaatgctgaggagtacatcgtg
tacctccgctctatagatcggctcgatgaggctgcagtccggctcgctggcatcgtcaac
gatgaatcctttgtctcaaaagaggggaaatcaaactaccaactatggcacgagctttgc
catctaatttctacaaacccagacaaagtgaaatccctgaatgttggagccattatccgg
ggaggtctgactcgtttcactgaccaactagggaagctctggtgttctttagctgactac
tacattcgaagtggtcattttgagaaggccagagatgtgtatgaagaggcgattcaaaca
gtgatgacagttcgcgatttcacccaagtctttgatagttatgcgcagtttgaggagagc
atgattgcagctaaaatggaaacgacagcagaaatggggcaagcagaagaagatgatatt
gatctggagcttcgattggcacggtttgagcagcttataaacagacgtcccctccttttg
aacagtgtactgcttcggcagaacccccacaatgtacatgagtggcataagcgggtcaaa
ctgtatgaaggaaaaccgcgagagatcataaacacgtacacagaagcggtccagaccgtt
gacccgttaaaagccaccggaaagccacattcgctctgggtttcgtttgcaaagttttat
gaagaaaatagtcaaattcgggatgctcgaaccatatttgaaaaagccacaaaagtaaac
ttcaagcacgttgatgaccttgccagcgtttggtgtgaatatggggagatggaactgcgg
catgaaaactatgatgaagctcttcaattgctgaggcgagccactgcagtacctgcaaag
aaagctgagtactttgattcaacagagcccgtccagagcagagtgtacaagtcactgaag
gtctggtccatgttagcagatctggaggagagtcttggcacttttaagtccacaaaagcg
gtttacgatcggattatagatctccgaattgccacacctcaaattatcatcaattacgca
atgtttctggaggaacacaactactttgaagaaagtttcaaggcctatgagagaggggtt
gctctatttaagtggcccaacgtgttcgacatttggaacacttaccttaccaaattcatc
gatcggtatggtgggaagaaactggaacgagctcgagacctgtttgaacaagctcttgat
gggtgtccgccgaaatttgccaaaactatctaccttctgtatgccaagctggaggaggag
tacggtttagctcgccacgccatggctgtgtacgaaagagcaaccaaggcagtcgagcct
ttggagcagtacgagatgtacaacatctacatcaaaagagcggctgaaatatacggagtt
acccacacgcggggtatctacgagaaggcgattgaggtgttgccagatgaacacgctcgg
gatatgtgcctgcggttcgcagatatggaatgtaaactgggtgaaattgatcgggcccga
tccatttactcttactgctcgcagctctgtgatccacggataacaccatcattctggcag
acgtggaaggaatttgagatccggcatggtaacgaggacaccattcgtgaaatgttgcgg
attaaacgtagcgtgcaggccacatacaacacccaggtcaattttatgtcatcgcagatg
ttaaaagcctccactaatgccacaggcacagtctctgaccttgcgcctggacaaagtgga
atggatgacatgaagctgctggagcagaaagcacaacagttagcggaagaagctgagagg
gaaaaacccaaacccaaagacaaaattctgtttgtcaggagcgatgcgtctcgcagtgag
ctggctgaacttaccaaacaagccaatcctgatgagattgacattgacgatgacgacgat
gacgaggaaggtgatgaagaacctgacgaggtgccacttgaacagaaaacagtccccact
gcagtgtttgggggcctgaaggatgactga
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