Chiloscyllium punctatum (brownbanded bambooshark): 140468517
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Entry
140468517 CDS
T11285
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140468517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140468517
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140468517
mRNA degradation factors
5'-3' decay
Decapping complex
140468517
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
ARL17
Motif
Other DBs
NCBI-GeneID:
140468517
NCBI-ProteinID:
XP_072420702
LinkDB
All DBs
Position
47
Genome browser
AA seq
772 aa
AA seq
DB search
MLGAPSARRRGQWRRSGWVSDGVARVGAMSRDMFALSDRQSLDDSPIEEDEEALQEEDHD
IDQFNDDTFGPGAVEDWEEQHDGLADPTGDPDDLLKESNLAESISKLVIDSDLEDPAIMR
AVPSNPPLQAPPRPNPSMWEGPMVFGGIGNPFLSHLEDGRALSGSKDSILPKRPAFGRGE
ERDLSDRAPPPRSSSPVIGSPPVRTAPIGTPPKHMSHPTSTQQPSILCPTPVHVRAPIHQ
RFSAPFNERMSPTQLLNVANSSLRAHHFQSGVTQVLNPLLLGTAQQTGRMSPSHFARVPG
LMGSPLTVMNTNLLQSRIGQMMPPITGFQPYFSPAATGQLQSIRSSQSMFRADTTHLHPQ
HRRLLNQRLQLQNSRNQHRGQNGSGGDRHSRGSYHEQVKKDPYSNLMTQREKEWVSKIQM
MQLQSADPYLDDYYYQNYFERLEKKQAALDLNNEGPRKEKKERMKLITPQVAKLEHIYRP
VQFEGSLGKLTVSSVNNPRKMIDAVVTTRSDDDETKEKQVRDKRRQTLFTIERTYSLVLE
VQDLEKKFLQVSEEERPAVLEHRKAKIALMYENLRGKQPPSSDRVSDDHFVQVMCIRKGK
RLAAKVLLFLSTEQAANVVLATARNLPYLVKKDSQDEVLPCLTEACSILVSRLPSSALTE
LLQQLTGSTPSGQPGNHFPTILQNKFGLTLFYMILSQGERLQSSEASSELMQDNRWTELV
FAVIRVLLKVPQASLAKPSFVPTNLLTLFSHYVDRQTLSLLESKLQLSGKLR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgctcggtgctcctagtgcgcgcaggcgcggccaatggcggcggtcgggatgggttagc
gacggagtggcgagagtcggagccatgtcccgggacatgttcgcgctgtcggaccggcag
tccctcgatgacagcccgatcgaggaagatgaagaagctctccaagaggaagatcacgat
atcgaccagttcaatgacgacacgttcgggcctggtgcggtcgaggactgggaggagcag
catgacggcctggctgatccgacaggggacccagatgacctgttgaaggagagcaacttg
gcggagagcatcagcaagctggtcattgacagtgacctggaggacccagccatcatgagg
gcagtgccgtctaaccctccgctgcaggcaccccctcgaccgaaccccagcatgtgggaa
gggcccatggtgttcggtggaatcggaaatcctttcctctcccatttagaggacggtcgc
gctctgtctggctcgaaggactccattctgcccaagagaccagccttcgggcgtggcgaa
gagcgggacctgtcggaccgtgcccctccgcccaggtcctcgtctcccgtgatcgggagc
ccccccgtacggaccgcccccatcggaacgccccccaagcacatgagccaccccacctcc
acccaacagccatccatcctgtgcccgacccctgtccacgtgcgagctccgattcaccag
cgattctcggcgcccttcaacgagaggatgtcaccgacccaactgctgaacgttgcgaat
tcctcactacgtgcccaccatttccaaagcggcgtcacccaagtgctgaacccacttcta
cttggaacggcccagcaaacaggaaggatgtcacccagccactttgcccgggtcccaggg
ttaatgggcagcccgctgacggtaatgaacaccaatctgctgcagagcaggataggacag
atgatgccgcccatcactggtttccagccgtatttcagcccagcagcgacaggacagctc
cagagcatcaggtcttcccagtccatgttccgggcggacaccacccacctccacccccag
caccgacggctcctcaaccaacgcctgcagctgcagaactccaggaatcaacacagaggt
cagaatggttctggaggagacaggcacagcaggggcagctatcacgagcaggtgaagaag
gacccctacagcaacctgatgacccagcgtgagaaggaatgggtcagcaagatccaaatg
atgcagctgcagagcgctgacccctacctggacgattactactatcagaactactttgag
aggctggagaagaagcaggcagccctggacctgaacaacgaggggccccgcaaggagaag
aaggaacgcatgaagctgatcacgcctcaggtcgccaagctggagcacatctaccggcca
gtgcagtttgagggctccctgggtaaactcaccgtgtccagtgtgaacaacccccgcaag
atgatcgatgctgtggtgacgacgcgctcggacgacgacgagacaaaagagaagcaagtc
agggataagaggcggcagaccctcttcaccattgagcggacgtacagcttggtgctggag
gtgcaggacttggagaaaaagttcctgcaggtgagtgaggaggagcgacctgccgtgctg
gaacaccgtaaggccaagatcgcgctgatgtacgagaacctgcgagggaagcagcctccc
agctctgacagagtcagcgacgaccattttgtgcaggtcatgtgcatccgtaagggcaag
cgcctggctgccaaggtcctcctgttcctgagcacggagcaggctgccaatgtggtgttg
gccactgcccgcaacctcccgtacctggtcaagaaggacagccaggatgaggtgctaccc
tgtctgactgaggcctgctccatcctggtcagccggctcccatccagcgccctgactgag
ctgctccagcagctgacgggatccactccgtccggacaacccgggaaccacttccccacc
atcctgcagaacaagttcggcctgaccttgttctacatgatcctgagtcaaggcgagagg
ctgcagagctcggaggcgtcgagcgaactcatgcaggacaaccggtggacagaactggtg
tttgccgtgatccgggtgctgctgaaggtgccgcaggcctcgctggccaaaccatcgttt
gtgcccacaaatctcctgacgctgttctctcactacgtcgaccggcagacgctgagcctg
ctggagtcgaagttacagttgtccgggaaactgcggtag
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