Chiloscyllium punctatum (brownbanded bambooshark): 140469510
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Entry
140469510 CDS
T11285
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
140469510 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpun00536
]
140469510 (col5a1)
Glycosaminoglycan binding proteins [BR:
cpun00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140469510 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
140469510
NCBI-ProteinID:
XP_072422192
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All DBs
Position
49:complement(28900182..29451314)
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AA seq
1856 aa
AA seq
DB search
MDNRSRWRRARRIWDCAVTLQILILSVITYVNAVEPVDVLKILELHNLPEGIERTIGFCA
NRKTTRTADVAYTVTKSAQLSAPTKQLYPDSAFPEDFSVLLTVRARKGKAAFLLSIYNEQ
GIQQLGVELARSPIFLYEDQTGKPSPEEYPVFNGVNLIDGKWHRVAISVHKKTVTMILDC
KKKFQKSLNRSKQPEIDTNGIIVFGTRILDEDVFEGEIQQLLIVPDHRAAYDYCEHYSPD
CETPLPDSPQSQDPNFDDYDPTGDNYYYEYPYYDPLYNENEVLTSTTSEYGEQRTGLVTE
VPDQQESQTEGEDFYEEPTTTLPKTITEEAYPSSVTGYYDIYGDEYYYPEIPLTDETLDT
EDYIVSGGDWLDNQTQTVRPEVFAYNETNFEGNPDDTINVDLDKRTGPEETEDKFNVTTI
GEEGDNTFYDDYEVYYEYEDFDDKESIGPVSPGITDNIHKVGTGPRGEKGQKGEPAIIEP
GMLIEGPPGREGPSGSPGRSGPPGPPGPVGDPGLRGPRGRSGLPGADGLPGPPGTMLMLP
FRFTGGGSAGEKGPMLSAQEAQAQAILQQARLALRGPTGPMGLTGRPGPIGPPGYLGIKG
EMGDIGPQGPRGAQGPPGPTGKPGRRGRAGADGSRGMPGPPGRKGDRGFDGLPGLPGEKG
NRGDAGPQGPPGPPGEDGERGDDGEAGPRGLPGEPGPRGLLGPKGPAGPSGPPGVTGMDG
HHGPKGSQGPQGEPGPPGQQGNPGAQGLPGPQGPIGPPGAKGPTGKPGLPGLPGADGPPG
HPGKEGPTGEKGSPGPPGPQGPIGYPGPRGVKGADGVRGLMGHKGEKGEDGFPGFKGDMG
VKGDRGELGPAGPRGEDGPEGPKGRFGPAGDNGPPGPPGEKGKLGVPGLPGYPGRQGPKG
SIGFPGFPGANGEKGVRGTPGKAGPRGQRGPTGPRGERGPRGATGKAGPKGSSGTDGPPG
PTGERGPPGPQGPMGFAGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQG
PTGETGSLGERGHPGPPGPPGEQGLPGSAGKEGAKGDPGPAGPPGKDGPPGLRGFTGERG
LPGPLGQIGLKGSEGPPGPPGPLGSPGDRGQAGPAGPIGLPGRPGPQGPPGPAGEKGAPG
EKGPQGPAGRDGVQGPVGLPGPAGPSGPPGEDGDKGEAGEAGQKGSKGDKGEQGPPGPSG
PQGPIGQPGPAGADGEPGPRGQQGLFGQKGDEGPRGFHGPPGPVGLQGLPGPPGEKGETG
DVGPMGPPGPPGPRGPSGAPGADGPQGPAGGIGNPGAVGQKGDTGEAGAPGPPGYLGMPG
PKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEAGPPGQDGPSG
DKGEDGEPGQIGSPGPTGEAGPPGPPGKRGPHGPAGPEGRQGEKGAKGDPGAEGPAGKTG
PVGPQGSPGKPGSEGLRGIPGPVGEQGLPGPPGPTGPPGPMGPPGLPGLKGDPGTKGEKG
HPGLIGLIGPPGEQGEKGDRGIPGPQGPQGPKGEMGVHGQAGPIGPPGPPGLTGPPGPKG
SKGSTGLTGPKGESGIQGPPGPPGPAGEVIQPFPIHSSQRAKRSIDASQLLEEGLPDNYL
NYADGMEEIFGSLNSLKLEIEQMKHPMGTQTNPARTCKDLFLCHPDFPDGEYWIDPNQGC
SRDSFKVFCNFTSGGETCIFPDKKSEGARVTSWPKEVPGSWFSEYKRGKLLSYTDADSNP
VGVVQMTFLRLLSASAHQNLTFTCHQTVAWYDATTDSYDKAIRFLGSNDEEMSYDNNPYI
QAIVDKCATKKGYQKTILQINTPKVEQLPFIDVMFNDFGESGQKFGFEIGPVCFVG
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggataatcggagccggtggaggagagcgagaaggatttgggactgtgctgtaacttta
caaatcctcatcctctcagtaataacttatgttaatgcagtggagccagtggatgtcctg
aaaattctagaacttcacaatttacctgaaggaatagagagaacgataggtttttgtgcc
aacaggaagacaacaaggactgcagatgttgcctataccgtaaccaaatcagcccagctc
agtgctccaaccaaacagttatacccagattcagcatttcccgaggatttctccgtctta
ttgacagttcgtgcaaggaaaggaaaggcagcctttctcctatccatctacaatgagcag
ggcatccaacagttaggagtggaactggctcgcagccccattttcctctatgaagaccag
acagggaaaccaagcccagaggaatatccagtttttaatggagtcaacctgattgatggg
aaatggcatcgggtagcaatcagtgtgcacaagaagacagtcaccatgatcctagattgc
aaaaagaagttccagaaatcactaaacaggagcaaacagcccgagattgatacaaacggc
atcattgtgtttggaacacggattctggacgaagatgtctttgagggtgaaatccagcaa
ctccttattgtgcctgaccaccgagctgcttatgattactgtgaacattacagcccagac
tgtgagacccccctgcctgattcaccgcagtctcaggatcccaactttgatgattatgat
cctacgggggataattattattacgaatatccatactatgaccctctatacaatgaaaac
gaagttctcacttcaacaacctccgaatatggagagcagcgtacagggctagtcactgaa
gtgccagaccaacaggagagccaaactgaaggtgaggatttctatgaggaaccaacaacc
accctcccaaaaaccataactgaggaggcatatccatcatcggtgacaggttattatgac
atctacggagacgaatattattatccagaaatcccactcacagatgaaacattggacaca
gaggattatattgtttcaggaggagattggctggacaatcagacccagactgtcaggccg
gaggtgtttgcatataacgagactaactttgaaggaaatcctgatgacaccatcaatgtg
gatctggacaagagaacaggaccagaagagacagaagacaaattcaatgtaactacaatt
ggtgaagaaggtgacaacacattctacgacgactatgaggtttattacgaatacgaagat
tttgatgacaaggaaagcattggccctgtttccccagggatcacagataacatccacaaa
gtgggcactggaccgaggggtgagaagggacagaaaggtgaacctgccatcattgaacca
ggaatgctgattgaagggcccccaggaagagaaggaccatctggcagtcctgggcgcagt
ggacccccaggacccccaggtccagtcggtgatccagggctgaggggaccccgtggacgt
tctgggctacctggggctgatggtttaccgggaccaccagggaccatgctaatgctgccg
ttccggttcacgggtggtggcagtgcgggagagaagggaccgatgctgtctgctcaggaa
gctcaagcccaggcaatattacagcaggccaggctggcattgagaggaccaactggacca
atgggattaactggaagaccaggccctattggaccacctggatacctcgggatcaaaggt
gaaatgggagacattgggcctcagggtccaagaggcgcacaaggcccacctggtccaaca
gggaaaccaggccgaaggggtcgagctggagctgatggatcgaggggaatgccaggacca
cctgggaggaagggagaccgaggatttgatggactccctgggcttccgggtgagaaggga
aacagaggggatgcagggccacagggaccacccggacctcccggtgaggatggcgagagg
ggcgatgatggagaagctggtccaagaggattaccaggtgaaccaggtccccgtggattg
ttgggtccaaagggacctgctggaccctcgggccccccaggggtgacgggaatggatggg
caccacggtccaaaaggcagccagggccctcaaggtgaacctgggcccccaggacagcag
gggaatccaggagctcagggtctgcctgggcctcagggaccaattggacctccaggagcc
aaaggacccactggcaaaccaggtctcccaggattaccaggagcagatggacctccgggt
caccccggcaaggagggtccaactggagagaagggtagcccaggtccaccagggccacag
ggtcccattggctatccaggaccacgtggtgtcaagggtgctgatggtgttcgtggcttg
atgggacataaaggcgagaagggtgaagatggtttcccaggattcaagggtgatatggga
gtaaagggcgacagaggtgagcttggtccagcgggtcccaggggagaagatggtcctgag
ggtccgaaaggccggtttggaccggctggagataatggcccacctgggccgcctggtgag
aagggaaaactgggagttccgggattgccaggctacccaggaagacaaggtccaaaaggt
tcgattggattcccaggatttccgggagcaaatggcgagaaaggagtgagggggactcca
ggaaaagcaggacccagggggcagagagggccaacggggccaaggggtgaacgtggccca
agaggagccacaggaaaagctggacctaagggtagctcaggcactgatggaccaccaggt
ccgactggtgagagggggccacctggacctcagggaccaatgggatttgctggacccaag
ggacctcctggcccagctggcaaggacggcttacctggacatccaggccaacgcggggaa
actggtttccaaggcaagactgggccacctggtcctcctggagtggttggcccccagggt
cccacaggagagactggctccctcggtgagcgtggccacccagggccccctggtcctcct
ggagaacaaggactgccaggatccgctgggaaagaaggtgcaaagggagatcctggtcct
gctggcccacctgggaaggatggtcctcctggcctccgaggattcactggtgaacgtgga
ctccctggcccccttggtcagattggtttgaaaggcagtgagggacctcctgggccccca
ggccccctgggctctccaggtgatcgtgggcaggctgggccggcaggacccatcggactc
cctgggcgacctggccctcaagggcccccaggccctgctggtgaaaagggagcccctggt
gagaaaggacctcagggaccagcaggtcgtgatggggtccagggtcctgttggtctccca
ggtccagctggcccatcagggccaccaggggaagacggagataagggtgaagctggtgag
gcaggacagaaaggcagcaaaggtgacaagggtgaacagggtccacctggtccgtcagga
cctcaaggccccattggacaacctggaccagctggtgcagatggagagcctggtccgaga
ggacaacaaggtctctttggccagaaaggtgatgaaggcccaaggggtttccatggtcct
cctggtccagttggtcttcaggggttacctggtccaccaggtgagaaaggtgaaactggt
gatgtgggaccaatgggtccccctgggcccccaggaccccgcggcccatctggtgctcca
ggggcagatggtccccaaggtcctgcaggaggaatcggtaacccaggcgccgtgggccag
aagggtgacactggagaggcgggagcaccaggacctccaggatatttgggaatgccaggt
cctaaaggagaacggggtgagaaaggtgaatctggaccatcaggtgctgctggacctcca
ggtccgaaaggtcctcctggggacgatggtccaaaaggaagtcccggaccagttggtttc
cctggtgaccccggtccccctggtgaagcaggccctccgggccaagatggaccttcaggt
gacaagggagaagacggtgaaccaggacagattggttcccctggtccaactggtgaagca
ggaccacctggtcctccaggaaagaggggtcctcatggtcctgcaggtcctgaggggaga
caaggagagaaaggagcgaagggtgaccctggtgctgaaggtcctgcgggtaagactggc
ccagtcggtccacaaggatctccaggtaaaccgggttcggaggggctgcgagggattcca
ggtcctgtgggtgagcaaggtttaccaggcccccctggtccaacgggaccaccaggccca
atgggtcctcccggattgccaggcctcaaaggcgaccctggtacaaagggtgagaaggga
catcctggtttgattggtttgatcgggcctccaggagaacagggtgagaaaggtgaccga
ggcattccaggacctcagggacctcaaggtcctaaaggagaaatgggtgtccatggtcaa
gctggtccgattggtcctcctggtcctcctggattaactggtccgcctggtcctaaaggt
tctaaaggttccactgggctgacaggtcctaaaggggaatcaggaatccagggaccaccg
ggaccacctggtcctgctggtgaggtcattcagccattcccaattcattcctcccaaaga
gccaagcgttccattgatgccagtcagctgttggaggaaggccttcctgacaattacctg
aactacgcagatggaatggaagagatctttggctccctgaactccttgaaactggaaatt
gaacagatgaaacatccaatgggcacacaaaccaaccctgcacgtacctgcaaggacctg
ttcctgtgccaccctgacttcccagatggtgaatactggattgacccaaaccaaggctgc
tccagagactcattcaaggttttctgtaatttcacatctggaggagaaacttgcatcttc
ccagacaagaaatcagaaggagcaagagtcacttcttggcccaaggaggtaccgggctcc
tggttcagtgaatacaagcgtggtaaactgctctcgtacacagatgctgacagcaaccca
gtcggagtggtgcagatgactttcctgaggttgttgagtgcttctgcccatcagaatctg
acctttacctgccaccagactgtggcctggtatgatgcgaccactgacagttatgacaag
gccatccgcttcctgggctccaatgatgaagagatgtcatacgacaacaacccctacatc
caagccattgtagacaaatgtgcaacaaagaaaggttaccaaaaaacgatcttacagatt
aacactcccaaagtggaacagcttcccttcatcgacgtcatgttcaatgactttggagag
tccggccagaagtttggttttgaaattggaccagtctgcttcgtgggataa
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