Chiloscyllium punctatum (brownbanded bambooshark): 140469649
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Entry
140469649 CDS
T11285
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140469649 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpun03041
]
140469649 (prpf4)
Spliceosome [BR:
cpun03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
140469649 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
PRP4
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
WD40_like
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
140469649
NCBI-ProteinID:
XP_072422456
LinkDB
All DBs
Position
49:complement(44149079..44194048)
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AA seq
506 aa
AA seq
DB search
MSDDDDAPLPKKSRIYYGSLEEKEKERISKGDGGYLGKDAVKAGIEAGHINVSSNEFYEV
EDHVSERQAEVLAEFERRKRARQINVSTDDAEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGADALKKTEKTEDAKKSRQEHQQTWYHEGPSTLKTARVYIARFSLPRAVKRLEEA
RANKEIPEASRTARQQELHKSLRALNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLCK
LWGVPDCSLIRTLRGHSTNVGAIVFHPQATISLDEKDCNMASCAADGSVKLWNLESDEPV
ADIEGHTMRVARVAWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVYDIAFHRD
GSLVGTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYGISFSPNGYHTATGSGDNTCKVWDL
RHRKCIYTIPAHQNLLSAVRFQPTDGHYLLTGAYDNTAKIWTHPGWSPLKTMAGHEGKVM
GLDISPNGQLIATCSYDRTFKLWTSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatgatgatgctccgttgcctaagaaatctcggatttactatggaagcctt
gaagagaaggagaaagaaaggatttccaaaggagatggaggatacctggggaaagatgct
gtgaaagctgggatagaagctggacatattaatgtatccagcaatgagttctatgaggtc
gaagaccacgtcagtgagaggcaagcagaggtgctggcagagttcgaacgcagaaaacga
gcacggcagattaatgtttcaacagatgacgcagaagtgaaggcctgcctacgagcactt
ggagaaccaatcactctttttggggaaggaccagctgagcgacgagagaggttacgtaac
atactatctgtggtgggcgctgacgctttgaagaaaacagaaaagacagaggatgcaaag
aaaagccgacaggagcatcagcaaacctggtatcacgagggccccagcaccttaaagacc
gctcgtgtctacattgcccgcttttctctgccaagagctgtgaagcgactggaggaagcc
cgggcaaacaaggagattccagaggcttcacgaactgcgcgacagcaagagctccacaaa
agcttacgggccttaaataatttctgcagccagattggtgatgaccgacccatctcctac
tgccagttcagccccaactccaagctcctagttacagcttcttggagtgggctttgtaag
ctttggggtgttcctgactgcagtcttatccgtacactgagaggtcacagcacaaatgtg
ggtgccattgtatttcatccccaggccaccatctcacttgatgagaaggactgtaacatg
gcatcgtgtgcagctgatggctcagtgaaactctggaatctggaaagtgatgaaccagta
gctgacattgaaggacataccatgcgagttgctcgagtggcatggcacccctcaggcaga
ttcctgggcaccacatgttatgaccactcctggcgactgtgggatctggaagctcaggag
gaaatcttacaccaggaaggccatagcaagggtgtctatgacattgcctttcaccgtgat
ggctcattggtgggaactggaggtctggatgcctttgggcgactgtgggatttacggacg
ggtcgatgcatcatgttcttggagggacatctgaaggagatctatgggatcagtttctct
cccaatgggtaccatacagcaacagggagtggagataatacctgcaaagtttgggacctt
cgccatcggaaatgcatctataccatcccagcacaccagaacctcctgtctgcagtcagg
tttcagcccacagatggacattacttgctgaccggtgcctatgacaacactgcaaagatt
tggacacaccctgggtggtcacctctcaaaaccatggctgggcatgagggcaaggtgatg
gggttggacatctctccaaacgggcagctgattgctacatgttcgtatgacaggaccttc
aaactctggacatctgagtag
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