KEGG   Chiloscyllium punctatum (brownbanded bambooshark): 140475704
Entry
140475704         CDS       T11285                                 
Symbol
rfc1
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
cpun  Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03030  DNA replication
cpun03410  Base excision repair
cpun03420  Nucleotide excision repair
cpun03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    140475704 (rfc1)
   03410 Base excision repair
    140475704 (rfc1)
   03420 Nucleotide excision repair
    140475704 (rfc1)
   03430 Mismatch repair
    140475704 (rfc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpun03032]
    140475704 (rfc1)
   03400 DNA repair and recombination proteins [BR:cpun03400]
    140475704 (rfc1)
DNA replication proteins [BR:cpun03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    140475704 (rfc1)
DNA repair and recombination proteins [BR:cpun03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     140475704 (rfc1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT AAA_14 Rad17 AAA_22 BRCT_2 AAA_5 AAA_7 RuvB_N AAA_30 AAA_16 nSTAND3 AAA_17 AAA_33 AAA_18 RNA_helicase TIP49 AAA_19 NTPase_1
Other DBs
NCBI-GeneID: 140475704
NCBI-ProteinID: XP_072423908
LinkDB
Position
1:complement(66948022..67029796)
AA seq 1208 aa
MTSSPRAARLRVEIVGAKCNGEGEEIXTTMDIRRFFGGLSTGKKPGSETLERNRAKNVGK
GTSDTKKKTDTKGKDSCNSISGKQKPVHRKKHIIYDSDSESEETPPDKKSKKNSCTTKSV
KPSKLETVTIISETDEEEDFQQSRKIAQRYQENGGHPGTSSSGRSADNKLQVKSPQPKPA
SPEKFTCTSVRDYFGTSTVQRSNKKLVASKRKAPSGSAGSTIDDEELARQLQLDEDAELE
RQLHEDEQFAKTLAMLDELPRSKKARTDSEGQELSLSLVVNAEPRKTDEQAAEHSGKAKT
LSGTDSNVKNCTEKVVSSKSQSLRTSSQHSPESSSVKVENSFSKSSPVKSSTKLAIMKRK
EELTHVIGNSPVRSVREKRSSPRKEEKTGFSKQGQTKISPKKEERTVSPNKEKISPNKKK
ISPNKSESENPETAEKKRQNYLAYRSFLNRDGPRALGSKEIPQGAENCLEGLSFVITGVL
ESMERDDAKSLIERYGGKLTGNISKKTNYLVTGREGGRAKLDKAESLGTKQIDEDGLLDL
IRRLPGKRSKYEIAAENEVKKSNNAREGGRIMQKGEHHSKTISPISKKQCEDNKGSPSTP
ENGESSRCAKRSILFKADPFSNQPEVKCEPQLQTSMKEEQSLLWVDKYKPAALKNIIGQQ
GEQSCANKLVRWLKRWHVNNSGDSKPTAKFTKSGGKDDGSSFKAALLSGPPGVGKTTTAT
LVCKDLGYSYVELNASDARSKNTLKEVIAESLNNTSIKGFSSGAPSVSTKHLLIMDEVDG
MSGNEDRGGIQEMISLIKRTKVPILCICNDRNHPKIRSLANYCFDLRFQRPRVEQIKGAM
MTVAFKEGLKIPPPAMNEIILAANQDIRQVLHNLSMWCAENKTLTYDQAKENGSKTRKDT
KLGPFDVVRKVFATGEEAAHMSLIDKSDLFFHDYSIAPLFVQENYLHVKPAAAGTNMKKH
LMLLSKTAESICDGDLVDKRIRSLQSWNLLPTQAIYASVIPGELMRGYMSQFPSFPSWLG
KFSSTNKHDRVVQELTRHMCLRTHASKRAVNLDYLPYLRDALVQPLTLQGTNGAQEAVAT
MNAYYLMKEDVDSIMEISSWAGRPDPFSKLDPKVKAAFTRTYNRETHLTPYALQAVKKLK
RGSTAGSSLDTELNDDLQTEDVQSEETEDNLELDGMIKPKKPKAKNKMEEQLPQQKGRKD
KGKRKATK
NT seq 3627 nt   +upstreamnt  +downstreamnt
atgacctcatctccgcgcgccgcacgcttgcgcgttgaaattgttggcgccaaatgtaac
ggcgaaggagaggagatannaaccaccatggacatcagaagattctttggtggcctttct
actgggaagaaacctgggagtgagactttggaaaggaatcgggctaaaaatgttggcaag
ggaacttcagatacaaagaagaaaactgataccaagggaaaggattcatgcaattcaata
tcaggaaagcaaaagccagtgcacagaaaaaaacacattatttatgattcagattctgaa
tctgaagagactcctccagacaagaaatctaagaaaaactcttgcaccaccaaatctgtg
aagccttccaaactagagactgttacaattatttctgaaactgacgaagaggaagatttt
caacaaagtaggaagattgcccagaggtatcaagaaaatggtggtcaccctggaacatct
agctctggaaggtctgcagacaataaattgcaggtcaaatcgccacagcctaaaccagcg
agtccagagaaattcacctgcacatctgtgcgcgattactttggcacaagcaccgttcag
agatcaaataaaaaactggtggctagcaaaaggaaagcaccttcaggcagtgctggttcc
acaattgatgatgaggagctggctcgtcagctgcaacttgatgaggatgcagagcttgag
aggcagctacatgaggatgaacaatttgctaaaacactggccatgttggatgagttgcca
agaagtaaaaaggcacgtactgattctgaaggtcaggaactatccttatccttggttgta
aacgctgaacccagaaaaacagatgagcaggcagcggaacattctggtaaagccaagacg
ttgagtggaactgacagcaatgtgaaaaattgtactgagaaagttgtaagtagcaaatca
cagagcctgaggacttcctcccaacactcacctgaatcttccagtgttaaagtggaaaac
tcatttagtaaatcctctccggtcaaaagcagtacaaaacttgctatcatgaaacgtaaa
gaagaactaacgcacgtgataggaaacagtccagtaagatcagtccgagagaagagaagt
tcgccaaggaaagaggagaaaactggattttcaaagcaaggtcaaaccaaaatttctcct
aagaaagaagaaagaactgtctctccaaataaagagaagatttctccaaacaaaaagaaa
atatccccaaataaatctgagtctgagaacccagagactgctgaaaagaagcgtcagaat
tacctggcctaccgtagcttcctgaaccgtgatggtcctcgagctctagggtctaaagaa
atccctcagggagctgagaactgcttggaaggactttcgttcgttattacaggagtcctg
gagtccatggaacgtgatgatgctaaatctttaatcgaacgttatggagggaagctgaca
ggaaatattagcaagaaaaccaattacttggtaactggtcgcgaaggtggacgagcaaaa
ctggacaaggctgagagtcttggaacaaagcaaattgatgaagatggactgctggaccta
attcgtagattgccaggaaagagatccaagtatgagattgcagctgaaaatgaggtgaag
aaatcaaataatgcgagagagggtggcaggatcatgcagaaaggcgaacaccatagcaag
acgatttcaccgatatcgaagaaacagtgtgaagataacaagggcagtccatcaacacct
gaaaacggcgagtcttcaagatgtgcaaagaggagtattttgttcaaagcagatcctttc
agcaatcaacctgaagtgaagtgtgaacctcagttgcaaacttcaatgaaggaagagcag
agtttgctgtgggtggataaatacaaacctgcagcgctgaagaatataataggacagcaa
ggggaacagagctgtgcaaataaactagttcgttggttgaaacgatggcatgtgaacaac
tctggggatagcaaacccacagcaaaattcactaaatctggtggaaaggatgatggttca
agtttcaaagctgcactgctgtccggtcctcctggtgtaggtaaaacaaccacagctact
ctggtctgtaaggatctgggctacagctatgttgaacttaatgccagtgatgctcgcagc
aaaaacacactaaaggaagtgatagcagagtcactgaacaatacaagtatcaaaggattc
tcatcaggagcaccatcagtaagcactaaacacttgctaatcatggatgaggtggatgga
atgtctggcaatgaggacaggggagggatacaggaaatgatttctctcattaaacggacc
aaagttcctattctctgtatatgtaatgaccgaaatcatcccaagatccgctcactggcc
aattactgctttgacctccgctttcagcggcctcgagtagaacaaatcaagggagcaatg
atgactgttgcttttaaagaaggcttgaagattccccctcctgctatgaatgaaattata
cttgcagcaaatcaggatatcagacaggttctgcataatctcagtatgtggtgtgcagaa
aacaagactttgacttatgatcaggcaaaagaaaatggcagcaagacgagaaaagatact
aaactgggtccctttgatgttgtgaggaaagtatttgctactggagaggaggcggcccac
atgagtctgatagacaagtccgaccttttctttcatgattactcaatagcaccgctcttt
gtgcaagaaaactatttgcacgtgaagcccgcagctgctggaacaaacatgaagaagcac
ctcatgctcttgagtaagacagcagaaagtatctgtgatggggatcttgttgataaaaga
attcgttctctgcagtcgtggaatctcctccctactcaggccatttatgccagtgtgatc
cctggtgaattgatgaggggatacatgtcacagtttccaagtttcccaagctggttggga
aaattttcatccactaataaacatgatcgtgttgtgcaagaacttaccaggcacatgtgc
ctaaggacgcatgccagtaaacgagctgtaaacttggattatcttccttacctgcgggat
gctttggtgcagcctctaacacttcagggaacaaatggtgctcaggaggcagttgcaacg
atgaatgcatattatctgatgaaagaggatgtagatagtatcatggagattagcagctgg
gctggtcgacctgatcctttctcaaaactagatcctaaggtgaaagctgcatttacacgg
acctataacagagagacacatttgactccctatgcactacaagctgtaaagaaattgaaa
cgtggaagtacagctggatcatcactggacactgaacttaatgatgacttgcagacagag
gatgtacagtcagaagagactgaggataatttggaattagatggaatgattaagccaaag
aaaccaaaagcaaagaacaaaatggaagaacaattaccacagcagaaaggaagaaaagat
aaagggaaacgaaaggcaaccaaatga

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