Chiloscyllium punctatum (brownbanded bambooshark): 140475704
Help
Entry
140475704 CDS
T11285
Symbol
rfc1
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03030
DNA replication
cpun03410
Base excision repair
cpun03420
Nucleotide excision repair
cpun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140475704 (rfc1)
03410 Base excision repair
140475704 (rfc1)
03420 Nucleotide excision repair
140475704 (rfc1)
03430 Mismatch repair
140475704 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpun03032
]
140475704 (rfc1)
03400 DNA repair and recombination proteins [BR:
cpun03400
]
140475704 (rfc1)
DNA replication proteins [BR:
cpun03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
140475704 (rfc1)
DNA repair and recombination proteins [BR:
cpun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
140475704 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
Rad17
AAA_22
BRCT_2
AAA_5
AAA_7
RuvB_N
AAA_30
AAA_16
nSTAND3
AAA_17
AAA_33
AAA_18
RNA_helicase
TIP49
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
140475704
NCBI-ProteinID:
XP_072423908
LinkDB
All DBs
Position
1:complement(66948022..67029796)
Genome browser
AA seq
1208 aa
AA seq
DB search
MTSSPRAARLRVEIVGAKCNGEGEEIXTTMDIRRFFGGLSTGKKPGSETLERNRAKNVGK
GTSDTKKKTDTKGKDSCNSISGKQKPVHRKKHIIYDSDSESEETPPDKKSKKNSCTTKSV
KPSKLETVTIISETDEEEDFQQSRKIAQRYQENGGHPGTSSSGRSADNKLQVKSPQPKPA
SPEKFTCTSVRDYFGTSTVQRSNKKLVASKRKAPSGSAGSTIDDEELARQLQLDEDAELE
RQLHEDEQFAKTLAMLDELPRSKKARTDSEGQELSLSLVVNAEPRKTDEQAAEHSGKAKT
LSGTDSNVKNCTEKVVSSKSQSLRTSSQHSPESSSVKVENSFSKSSPVKSSTKLAIMKRK
EELTHVIGNSPVRSVREKRSSPRKEEKTGFSKQGQTKISPKKEERTVSPNKEKISPNKKK
ISPNKSESENPETAEKKRQNYLAYRSFLNRDGPRALGSKEIPQGAENCLEGLSFVITGVL
ESMERDDAKSLIERYGGKLTGNISKKTNYLVTGREGGRAKLDKAESLGTKQIDEDGLLDL
IRRLPGKRSKYEIAAENEVKKSNNAREGGRIMQKGEHHSKTISPISKKQCEDNKGSPSTP
ENGESSRCAKRSILFKADPFSNQPEVKCEPQLQTSMKEEQSLLWVDKYKPAALKNIIGQQ
GEQSCANKLVRWLKRWHVNNSGDSKPTAKFTKSGGKDDGSSFKAALLSGPPGVGKTTTAT
LVCKDLGYSYVELNASDARSKNTLKEVIAESLNNTSIKGFSSGAPSVSTKHLLIMDEVDG
MSGNEDRGGIQEMISLIKRTKVPILCICNDRNHPKIRSLANYCFDLRFQRPRVEQIKGAM
MTVAFKEGLKIPPPAMNEIILAANQDIRQVLHNLSMWCAENKTLTYDQAKENGSKTRKDT
KLGPFDVVRKVFATGEEAAHMSLIDKSDLFFHDYSIAPLFVQENYLHVKPAAAGTNMKKH
LMLLSKTAESICDGDLVDKRIRSLQSWNLLPTQAIYASVIPGELMRGYMSQFPSFPSWLG
KFSSTNKHDRVVQELTRHMCLRTHASKRAVNLDYLPYLRDALVQPLTLQGTNGAQEAVAT
MNAYYLMKEDVDSIMEISSWAGRPDPFSKLDPKVKAAFTRTYNRETHLTPYALQAVKKLK
RGSTAGSSLDTELNDDLQTEDVQSEETEDNLELDGMIKPKKPKAKNKMEEQLPQQKGRKD
KGKRKATK
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgacctcatctccgcgcgccgcacgcttgcgcgttgaaattgttggcgccaaatgtaac
ggcgaaggagaggagatannaaccaccatggacatcagaagattctttggtggcctttct
actgggaagaaacctgggagtgagactttggaaaggaatcgggctaaaaatgttggcaag
ggaacttcagatacaaagaagaaaactgataccaagggaaaggattcatgcaattcaata
tcaggaaagcaaaagccagtgcacagaaaaaaacacattatttatgattcagattctgaa
tctgaagagactcctccagacaagaaatctaagaaaaactcttgcaccaccaaatctgtg
aagccttccaaactagagactgttacaattatttctgaaactgacgaagaggaagatttt
caacaaagtaggaagattgcccagaggtatcaagaaaatggtggtcaccctggaacatct
agctctggaaggtctgcagacaataaattgcaggtcaaatcgccacagcctaaaccagcg
agtccagagaaattcacctgcacatctgtgcgcgattactttggcacaagcaccgttcag
agatcaaataaaaaactggtggctagcaaaaggaaagcaccttcaggcagtgctggttcc
acaattgatgatgaggagctggctcgtcagctgcaacttgatgaggatgcagagcttgag
aggcagctacatgaggatgaacaatttgctaaaacactggccatgttggatgagttgcca
agaagtaaaaaggcacgtactgattctgaaggtcaggaactatccttatccttggttgta
aacgctgaacccagaaaaacagatgagcaggcagcggaacattctggtaaagccaagacg
ttgagtggaactgacagcaatgtgaaaaattgtactgagaaagttgtaagtagcaaatca
cagagcctgaggacttcctcccaacactcacctgaatcttccagtgttaaagtggaaaac
tcatttagtaaatcctctccggtcaaaagcagtacaaaacttgctatcatgaaacgtaaa
gaagaactaacgcacgtgataggaaacagtccagtaagatcagtccgagagaagagaagt
tcgccaaggaaagaggagaaaactggattttcaaagcaaggtcaaaccaaaatttctcct
aagaaagaagaaagaactgtctctccaaataaagagaagatttctccaaacaaaaagaaa
atatccccaaataaatctgagtctgagaacccagagactgctgaaaagaagcgtcagaat
tacctggcctaccgtagcttcctgaaccgtgatggtcctcgagctctagggtctaaagaa
atccctcagggagctgagaactgcttggaaggactttcgttcgttattacaggagtcctg
gagtccatggaacgtgatgatgctaaatctttaatcgaacgttatggagggaagctgaca
ggaaatattagcaagaaaaccaattacttggtaactggtcgcgaaggtggacgagcaaaa
ctggacaaggctgagagtcttggaacaaagcaaattgatgaagatggactgctggaccta
attcgtagattgccaggaaagagatccaagtatgagattgcagctgaaaatgaggtgaag
aaatcaaataatgcgagagagggtggcaggatcatgcagaaaggcgaacaccatagcaag
acgatttcaccgatatcgaagaaacagtgtgaagataacaagggcagtccatcaacacct
gaaaacggcgagtcttcaagatgtgcaaagaggagtattttgttcaaagcagatcctttc
agcaatcaacctgaagtgaagtgtgaacctcagttgcaaacttcaatgaaggaagagcag
agtttgctgtgggtggataaatacaaacctgcagcgctgaagaatataataggacagcaa
ggggaacagagctgtgcaaataaactagttcgttggttgaaacgatggcatgtgaacaac
tctggggatagcaaacccacagcaaaattcactaaatctggtggaaaggatgatggttca
agtttcaaagctgcactgctgtccggtcctcctggtgtaggtaaaacaaccacagctact
ctggtctgtaaggatctgggctacagctatgttgaacttaatgccagtgatgctcgcagc
aaaaacacactaaaggaagtgatagcagagtcactgaacaatacaagtatcaaaggattc
tcatcaggagcaccatcagtaagcactaaacacttgctaatcatggatgaggtggatgga
atgtctggcaatgaggacaggggagggatacaggaaatgatttctctcattaaacggacc
aaagttcctattctctgtatatgtaatgaccgaaatcatcccaagatccgctcactggcc
aattactgctttgacctccgctttcagcggcctcgagtagaacaaatcaagggagcaatg
atgactgttgcttttaaagaaggcttgaagattccccctcctgctatgaatgaaattata
cttgcagcaaatcaggatatcagacaggttctgcataatctcagtatgtggtgtgcagaa
aacaagactttgacttatgatcaggcaaaagaaaatggcagcaagacgagaaaagatact
aaactgggtccctttgatgttgtgaggaaagtatttgctactggagaggaggcggcccac
atgagtctgatagacaagtccgaccttttctttcatgattactcaatagcaccgctcttt
gtgcaagaaaactatttgcacgtgaagcccgcagctgctggaacaaacatgaagaagcac
ctcatgctcttgagtaagacagcagaaagtatctgtgatggggatcttgttgataaaaga
attcgttctctgcagtcgtggaatctcctccctactcaggccatttatgccagtgtgatc
cctggtgaattgatgaggggatacatgtcacagtttccaagtttcccaagctggttggga
aaattttcatccactaataaacatgatcgtgttgtgcaagaacttaccaggcacatgtgc
ctaaggacgcatgccagtaaacgagctgtaaacttggattatcttccttacctgcgggat
gctttggtgcagcctctaacacttcagggaacaaatggtgctcaggaggcagttgcaacg
atgaatgcatattatctgatgaaagaggatgtagatagtatcatggagattagcagctgg
gctggtcgacctgatcctttctcaaaactagatcctaaggtgaaagctgcatttacacgg
acctataacagagagacacatttgactccctatgcactacaagctgtaaagaaattgaaa
cgtggaagtacagctggatcatcactggacactgaacttaatgatgacttgcagacagag
gatgtacagtcagaagagactgaggataatttggaattagatggaatgattaagccaaag
aaaccaaaagcaaagaacaaaatggaagaacaattaccacagcagaaaggaagaaaagat
aaagggaaacgaaaggcaaccaaatga
DBGET
integrated database retrieval system