Chiloscyllium punctatum (brownbanded bambooshark): 140476203
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Entry
140476203 CDS
T11285
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpun03041
]
140476203 (prpf39)
Spliceosome [BR:
cpun03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
140476203 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
Mad3_BUB1_I
TPR_15
SlyX
DUF2229
PPTA
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
140476203
NCBI-ProteinID:
XP_072424529
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All DBs
Position
4:38214046..38278565
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AA seq
712 aa
AA seq
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MEARDSNQTLPPQSDGLKSADECDFHKSISSTADSLSHELLNPNMESADEAINLQSRGVI
SEDEVDQRTSLKPFTDLSEISVAQVESPEGSASMDTESQPENSPPEGTVEEIENIELNDS
GIPFPTEYEKFWKVIEDNPQDFTGWTYLLQYVEQENHILAARKAFDHFLSHYPYCYGYWK
KYADLERRHDNVKRAEEVYRRGLQAIPLSVDLWLHYINFLKETLDSNCPEIDDQIKSVFE
HAVLAAGTDFRSDRLWETYINWENDRGNLEEVTTIYDRILGIPTQLYSHHFQRFKDHVQN
HLPKDIISSEDFIKLRQELASTNEHFDNVTPGNDLTAGIDINDPAQIVSEIENMRHRIIE
VRQETYNHNENEVSRRWAFEEGIKRPYFHVKPLEKIQLKNWKDYLDFEIENGTLERVVVL
FERCLVACALYEDFWIKYAKYMENHSSEAVRHVYSRACTVHLSKKPMVHLLWAAFEEQQG
NINEARRILKMLEESVPGLAMVRLRRVSLERRHGNMDEAEFLLQDAIKNSKTPNEASFYA
VKLARLLFKVEKSLPKARKVLLEAIDFDKESTKLYLNLLELEYNSDLKLNEENILNAFDK
AISSSMAIETRIAFSQRKVEFLEDFGSDVKRLMVAYDDHQQLLKEQESSKRKAENGSEEP
EEKKQRSDATLASAQLMSGDLQANQSAYNYNAWYQYNYAAPWNYGQYYPPPT
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgcgagactctaatcagacactgccaccacagagtgatggacttaagtctgca
gatgaatgtgattttcataaaagtatttcgtctactgctgattccctttcacatgagctg
ctcaatccaaacatggagtctgctgatgaagccatcaatttgcaatcaagaggtgtgatt
agtgaggatgaagttgatcagagaaccagtttgaagccttttacagatttgtcagaaata
tctgtggctcaagttgaatctccagaaggatccgcatcaatggacactgaatctcaacct
gagaattccccacctgaaggaacagtagaagagatagaaaatatagaactgaatgattca
gggatcccctttcctacagagtatgaaaagttttggaaagtgattgaagacaatccccag
gacttcactggttggacatacttgttgcaatatgtggaacaagagaatcatatccttgct
gccagaaaagctttcgatcacttcttgtcccactatccatactgttatggctattggaaa
aaatatgctgatcttgagcggcgacatgacaatgtgaaacgggcagaagaggtataccga
cgaggtcttcaagcaataccacttagcgttgatctttggcttcactatatcaatttctta
aaagagaccttggacagcaactgtccagagattgatgaccaaataaaaagtgtatttgaa
catgctgtgttagctgcagggactgactttcgctcagacagactttgggaaacttacatc
aactgggaaaatgaccggggaaatctggaagaagtgactacaatttatgatcggattctt
ggtattccaacgcagctttacagtcatcacttccaaaggttcaaagatcatgttcagaat
cacttgcctaaagatataatatcttcagaggattttattaaactacgtcaagagctggca
tccacaaatgaacattttgataatgttactccaggaaatgatctaacagctggaattgat
ataaatgatcctgctcagattgtctctgaaatagaaaatatgcgtcatagaataattgaa
gttcgtcaggaaacatataatcataatgagaatgaagttagcagacgatgggcttttgaa
gaagggattaaacggccttactttcatgtaaaaccattggaaaaaatacagctaaaaaac
tggaaagattatcttgactttgagatagaaaatggaactcttgaacgtgtggtggttttg
tttgagaggtgtcttgttgcttgtgccctttatgaagacttctggataaagtatgctaaa
tacatggaaaaccacagtagtgaagctgtgcgacatgtctacagcagagcatgtacagtt
catctatcaaagaaacccatggtacatttactttgggcagcttttgaggaacagcaagga
aacattaatgaagctagaagaatcttgaaaatgctagaagaatctgtaccagggttagct
atggtccgcttgagacgagtaagcttagaacgtcgccatgggaatatggatgaagcagaa
tttctgctacaggatgcaattaaaaacagcaaaacacccaacgaagcatctttctatgct
gtgaagttggctcgtcttttatttaaagtagagaaaagtcttcctaaggccagaaaggtc
ctattggaagcaatagactttgataaggaaagtaccaaactttatctaaatcttttggaa
cttgaatacaattcagatctcaaactgaatgaggaaaacattctgaatgcttttgataaa
gcaataagtagctcaatggctatagaaacgagaatagccttctctcagcgaaaagttgag
tttttggaagactttggctctgatgtaaaaagactcatggtggcttatgatgatcatcaa
cagcttttaaaagagcaagagtcatctaaaagaaaggcagaaaatgggtcagaagagcca
gaggagaaaaagcaaagaagtgatgcaacattagcatctgcccagctgatgagtggggac
ttgcaggctaatcagtctgcatataattacaatgcttggtatcagtacaattatgcagca
ccctggaactatgggcagtattacccaccacctacataa
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