Chiloscyllium punctatum (brownbanded bambooshark): 140476844
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Entry
140476844 CDS
T11285
Symbol
npc1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
cpun04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
140476844 (npc1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
140476844 (npc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cpun02000
]
140476844 (npc1)
Transporters [BR:
cpun02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
140476844 (npc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
140476844
NCBI-ProteinID:
XP_072425766
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All DBs
Position
5:complement(4732151..4768253)
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AA seq
1275 aa
AA seq
DB search
MSSSCGVVAAVALLVLILPEPSIFAQDGTCIWYGQCGTDPVTHKRYNCKYNGPPKALPKA
GYDLIDELCPSFHYGNLSLCCDVEQLQTLKDNVQLPLQFLSRCPSCFHNFMTFYCELTCS
PTQSLFLNATKFEKYVQDKISITEVEYYIGSHFANAMYNACKDVQSPSSNDKALGLLCGK
DVEECNATNWIQYMCSTSNAQTPFNIVPIFSDNPIGRMIPMNNETKGCNETLDDGSPACS
CQDCLLVCGPKPAPPPLPIPWTIFGLDAMAVIMWISYLIFLSIFGGAVIGMSYCRKSHMV
TEYTPISDPSANHLVNKHHLDISCCEQLGAKSEALLRDLFTKWGSFCVRKPFLVIVVTIF
AVGVCSSGLVYMKITTDPVEIWSAPSSQARKEKYYFDTHFGPFFRTEQLIITAPNSSWTI
YSPYPSGADVPFGPPLDKDILHQVLDLQDAIQDLKAYYKNETVKLKDICLAPLAPYNNNC
TILSVLNYYQNSHAVLDHSVGDDFYTYADYHSHFLYCTRAPASLNDTTMLHDPCLGTFGG
PVFPWLVLGGYNGDDYNNATALVITFPVNNYHNDTEKLNKALAWEKALIDFLKAYNESNL
TIAFSTERSIEDEINRESNSDINTIIISYAIMFLYISIALGHIRSCWTFMVDSKISLGIA
GIVIVLSSVACSLGIFSYAGIPLTLIVIEVIPFLVLAVGVDNIFIIVQTFRRDTRLQNES
IDQQIGRVLGEVAPSIFLSAFSETVAFFLGSLSTMPAVRTFSLFAGMAVFIDFILQITCF
VSLFGLDVQRQESNRMDIVCCVKKQENVDGHSEELLFRVFKHAYAPFLLTNWMRPVVISM
FVGLLSFSIAVLNKVEIGLNQSYSMPDDSYVLHYFESMAEYLHAGPPVYFVIEKGHNYTS
PEGQNTVCGGVGCNNDSLIQQIYNAALLDNYTRIGFPPSSWIDDYFDWVKPQSSCCRVYN
TTKSFCNASVVDDSCIRCRPLSREGKERPYGEDFMNFLPMFLSDNPSPKCGKGGHAAYSS
AVNMLENNTAVGATYFMTFHTVLKTSADFIAAAKHARSLAENITESMGISHKGYRVFPYS
VFYVFYEQYFTIVKDTIFNICVSLGAVFTVTTILLGCEVWSAMIVCITISMIITNMFGVM
WLWNISLNAVSLVNLVMCCGISVEFCSHIVRAFSVSLKETRVQRAEEALANMGSSVFSGI
TLTKFGGIVVLAFAKSQIFQIFYFRMYLAIVLLGAAHGLIFLPVFLSYVGPTINKGKVSA
LQNHYQNTEEEQLLK
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttcgtgcggcgtcgtcgccgccgtcgcgctgctggtcctgatccttccggaa
ccttcgatatttgcacaggatggaacttgcatatggtatggacaatgtgggacagatcct
gtcacacacaagcggtataattgtaaatacaatggccccccaaaagcactaccaaaagca
ggatatgacttaattgatgaattgtgccccagttttcactatgggaatcttagtctttgc
tgtgatgttgaacaactacaaacacttaaggataatgtacaactaccactgcagttcctg
tccagatgtccatcctgttttcacaattttatgaccttttattgtgaactgacctgcagt
cctactcagagcctatttctgaatgccaccaaatttgaaaaatatgttcaggacaaaatc
agcattacagaagtggaatattacattggatcacactttgcaaatgcgatgtataatgca
tgcaaggatgttcagtccccatccagtaatgacaaagctctgggactgctttgtggaaaa
gatgtagaagagtgcaatgcgaccaactggattcaatatatgtgtagtacaagtaatgca
cagactcccttcaacattgttcctattttcagtgataatccaattggaagaatgatcccc
atgaataatgaaaccaaaggctgcaatgagacattggatgatggttctccagcatgcagt
tgccaagactgtttactggtttgtggcccaaaaccagctcccccaccattacctatccca
tggaccatttttggtttagatgctatggctgttataatgtggatctcctatctgatcttc
ctgtctatctttgggggagcagttattggcatgtcttattgcaggaaaagtcacatggtg
acagaatatacaccaatcagtgatcctagtgcaaatcacttggttaacaagcatcattta
gatatttcttgctgtgaacagcttggtgcaaaatctgaagctctcctgcgtgatctattc
acaaagtgggggtccttctgtgtgagaaaacctttcctagttattgtggtgaccattttt
gctgtgggagtctgcagctctggtttggtatacatgaaaataactactgatccagttgaa
atctggtctgccccatccagccaagctcgcaaggaaaagtattattttgatacccacttt
ggaccctttttccgcacagagcagctaattattacagctccaaatagttcctggactatt
tattctccttatccatctggggcagatgtgccatttggccctccactggacaaagacatc
ctgcatcaggtacttgatttacaggatgctattcaagacttaaaagcttattacaagaat
gaaactgtgaagctgaaggatatctgcttggcacctttggctccatataataataactgt
accatcttgagtgtcctgaactattaccaaaacagtcatgctgtccttgatcattctgtt
ggtgatgacttttatacatatgctgactaccatagtcactttctgtattgcactagggca
ccagcttcactgaatgatacaactatgcttcatgatccttgtttgggcacatttggtgga
ccagtatttccatggctggttcttggtggatataatggtgatgattataacaatgccaca
gcactagtaatcactttccctgtaaataattatcataatgacactgagaaactgaacaaa
gcactggcttgggagaaggcacttattgattttctgaaagcttacaatgagtctaacttg
acaattgcattctcaactgaacggagcattgaagatgagattaatcgggagagtaacagt
gatatcaataccattatcattagctatgcaatcatgttcttgtacatctccattgctctg
gggcacatcagaagctgctggactttcatggtggactcgaagatttcactgggaattgct
ggtattgtgattgtcctaagttctgtggcctgttctcttggtatcttcagttatgctggc
attcccctcacgctgattgtgattgaagtcatcccctttttggtgttggcagttggtgta
gacaatatctttatcatcgttcagacatttcggagagacacacgtttacagaatgagtcc
attgaccaacagattggtagagttttgggagaagttgcaccaagtatattcctctctgcc
ttctctgagacagtggccttctttctgggttctttatcaacaatgccagcagtccgcacc
ttctccctctttgcagggatggctgtatttatagatttcatcctgcagataacctgcttt
gtaagtctctttgggttggatgtccagcgccaagagagtaatcgtatggatattgtgtgc
tgtgtgaaaaaacaagaaaatgttgatggtcattcagaggaacttcttttcagagtcttc
aaacatgcatatgcaccatttctgttaaccaactggatgcggcctgttgtaatatctatg
tttgttggtctactgtcattcagtattgcagtattaaataaagttgagattggactgaat
cagagttattcaatgccagatgattcatatgttctgcactattttgaatcaatggctgag
tacttgcatgcaggccctcctgtctacttcgtgatagaaaaaggacataattacacttct
ccagaaggacaaaataccgtgtgcggtggtgttggttgtaacaatgactctctcatccaa
caaatttataatgctgctttgttagacaactatacaagaattggttttccaccatcatca
tggattgatgattactttgactgggtgaagccacaatcctcctgctgcagagtctacaat
actacaaagagcttctgcaatgcttcagttgttgatgattcgtgcattcgctgccgccca
ctttcccgagagggaaaagagcgaccatatggagaagacttcatgaactttctccccatg
tttctgtctgataatccaagtccaaaatgtggcaaaggaggccatgcagcatacagctcc
gcagtcaacatgcttgaaaacaatactgctgtgggagccacttatttcatgacctttcac
acagtactgaaaacatcagctgatttcattgctgctgccaagcatgcacggagtcttgca
gaaaacataactgaatccatgggcatttctcacaaaggctatcgtgtctttccatacagt
gtgttttatgtattttatgaacaatatttcacaattgtgaaagacactattttcaacatc
tgtgtctctctgggagctgtgttcactgtgactacaatcctgctgggctgtgaagtttgg
tctgccatgattgtctgcatcaccatttctatgatcataacaaacatgtttggagttatg
tggctgtggaacatcagtcttaatgcagtctccttggtaaacctggttatgtgctgtggt
atttcagttgagttctgtagccatattgttcgagcattttccgtcagtctgaaggaaacc
agagtgcagcgtgctgaggaagcactggcaaatatgggcagttctgtgtttagtggcatc
acactgacaaagttcggaggtattgtggtcctggcatttgccaaatctcagattttccag
atcttctacttcaggatgtacttggcaattgtgcttttgggagctgctcatggcctcata
ttccttccagtctttctttcttacgtgggaccaaccattaacaaagggaaagtttcagct
ctgcaaaaccattaccagaacactgaagaggagcaactgctaaagtaa
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