Chiloscyllium punctatum (brownbanded bambooshark): 140477018
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Entry
140477018 CDS
T11285
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140477018 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpun03021
]
140477018 (smarcc1a)
03036 Chromosome and associated proteins [BR:
cpun03036
]
140477018 (smarcc1a)
Transcription machinery [BR:
cpun03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140477018 (smarcc1a)
Chromosome and associated proteins [BR:
cpun03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
140477018 (smarcc1a)
PBAF complex
140477018 (smarcc1a)
GBAF(ncBAF) complex
140477018 (smarcc1a)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140477018
NCBI-ProteinID:
XP_072426221
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Position
5:40710499..40932369
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AA seq
1088 aa
AA seq
DB search
MAAAVGASRKKDGGPNIRFLEASETVAQFDGLRLWLGKNYKKFVQADSPSNKTLAGLVVQ
LLQFQEDAFGKHVNNPALTKLPAKCFLDFKAAGPLGHILGAAYKFKTEQGWRRFDLQNPS
RMDRNVEMFMTIEKTLVQNNCLTRPTIYLPSELDPKLANKCKDIVKRHQGTITEDKSKAS
HIIYPIPNSLDEEEWLRPVMKREKQVLVHWGMFPDSYDTWMPANEIEAEIEEPPIPERPW
KVHAKWILDTDVFNEWMNEEDYEVDDNRKPVSYRQRIPIRTVAEEDSRTPDRKDRKSTTG
AKKRKHSRSPSPISTPAESRKKSGKKGQLTPYLKRRGQKDEEEQEDLTKDMEDPTPVPNV
EEVILPKNVNPKKDSEHTPVKGGTIADLDEQEDEPLSAGGKEEEDSSNAKGDHIRPVDQA
EDNVTEQTHHIIIPSYSAWFDYNSIHEIERRALPEFFNGKNKSKSPEIYLAYRNFMIDTY
RLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDADSRPLPMGPPPTPHFNV
LADTPSGLVPVHLRTPQIPASQQMLNFPEKPKDKPADLQNFGLRTDMYTKKGTLAKQSKA
SAARDWTDQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILNFLRLPIEDPYLEDTDSS
LGPLAFQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSHVREEVPVELVEAH
VKKVQEMARSSGKVDPSYGLENSGIAGTAPEEPEKSGDVEEEKMETQEPEGQEPEKQVEK
EEAEATSESTEKMQIPSPKELASEKIIESEAASTDIKPIVADEKDKEENKENIDVTAKDK
ELDVGKKKLEQHIGEGNIVTAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLE
IKLRHFEELETIMDREREALEQQRQQLLTERQAFHMEQLKYAEMRARQQLEQQHHQQQQH
SQNAAATTTTTTSIQQMSSMGMMQQGPTPPPPYPMMHHQMQQQLGQMSGAGTMMTGQAMA
GRMIPNLPPNIPSGAPPHPTPTIVSAAAHGNMLGPRPAAATNGMYSGPAVQPDGVVVPTT
TAQASAVP
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcagttggagcgtctcgtaagaaagacggaggcccgaacatcaggtttctg
gaggcttcggaaaccgtcgcgcagttcgacggcctgaggttgtggctgggcaaaaactac
aagaaatttgtacaggcagattcaccttcaaacaaaacactggctggtcttgtggtgcag
ttgcttcagtttcaggaagatgcatttggcaagcatgttaataatcctgcattaactaaa
cttccagcaaaatgcttcctcgacttcaaagctgcaggacccttgggtcatatcctaggt
gctgcttacaaattcaagactgaacagggatggagaagattcgacttgcaaaatccttcc
agaatggatcgtaatgtagaaatgtttatgacgatagagaagacactggtgcagaataac
tgtttaacaagacctacaatctacctcccatctgaacttgacccaaagctggcaaataaa
tgtaaagatattgttaaaaggcatcagggaacaattacagaagataagtcaaaagcctcc
catataatttatcctattccgaactctctcgatgaagaggagtggttgagacctgttatg
aagcgagaaaagcaagtcctggtccattggggaatgtttccagatagctatgatacctgg
atgccggccaatgaaattgaagctgaaattgaagaaccaccaatcccagaaaggccatgg
aaagtgcatgctaagtggatcctggacactgatgtattcaatgagtggatgaatgaagag
gactatgaagttgatgacaacagaaagcctgtaagctaccgacagcgcattcctatcagg
acagtagctgaagaggactcccgtacaccggataggaaggacagaaagtcaacaactggt
gccaagaaaagaaaacattcccgttccccttcaccaatatcgacacctgctgagtcaaga
aagaaaagtggaaagaaaggtcagctgacaccatacttaaagaggagggggcagaaagat
gaagaggagcaggaagacctgaccaaagacatggaggatcccactcctgtaccaaatgta
gaagaagttattttacctaaaaatgtgaatcccaagaaggacagtgaacacacacctgtg
aagggaggcacaattgcagatctagatgagcaagaggatgaaccattgtctgcaggaggg
aaggaagaagaggacagttccaatgccaaaggtgatcatatacgtcctgtggaccaagcc
gaagataatgtcactgaacagacacatcacatcattatccctagctattcagcatggttt
gactataacagtatacatgagattgagcgtcgtgccttgccagaattcttcaatgggaaa
aataagtcgaaaagtccagaaatatatctggcataccgaaactttatgattgacacctat
cggttaaatcctcaggagtaccttactagtacatcatgtcgcagaaatttaactggtgat
gtttgtgctgtaatgagagttcatgcattccttgaacaatggggccttgtgaattatcaa
gtggatgccgacagtcgacctctacccatgggtcctccccctacccctcacttcaatgtg
cttgctgataccccctctggcttggtccccgttcatctcaggactcctcaaattcctgcc
tctcagcaaatgttgaactttccagaaaaaccaaaggacaaacccgctgacctgcagaat
tttggcctgcgtactgacatgtataccaagaagggcaccttagcaaaacaaagtaaggcc
agtgcagccagggattggacagaccaggaaactctgctgctgttggaggctctggaaatg
tacaaagatgactggaataaagtatccgagcacgttggcagccgtacacaagacgagtgt
attttgaatttcctgcgactgcccattgaagatccttatttggaagacactgactcctcc
cttggccctctggcctttcaacctgttcctttcagtcagtctgggaatcctgtcatgagc
acagtggcattcctggcctccgttgtggatcctcgagtagctgcagcagctgccaaggct
gctttagaggaattttctcatgtaagggaagaggtgccagttgaactggtcgaggctcat
gtgaagaaagtgcaagagatggctcgctcttctgggaaagtggatccttcctatggcctg
gaaaacagtggcattgcaggcactgcccctgaggaaccagagaagagtggggatgttgaa
gaggaaaagatggaaactcaggaacctgaagggcaagagccagaaaaacaggttgaaaaa
gaggaggctgaagcaacttctgaaagtacagagaagatgcaaatcccatctcctaaggag
ctggcatcggagaaaattatagaaagtgaagctgccagtactgacattaagccaattgta
gcagatgaaaaagacaaagaggagaacaaggaaaatattgatgtcactgccaaagacaaa
gaattggatgttgggaagaagaaattagagcagcacattggtgaaggaaacatagtcact
gctgctgcagcagctctggcttcagctgctacaaaggcaaagcaccttgcagcagtggag
gagaggaagatcaagtcactggttgctcttctggttgaaacccaaatgaagaagctggaa
ataaaactgcgtcactttgaagaattggaaaccattatggatcgagagagagaagcactg
gaacagcagcgacaacaactgctcacagaacgacaggccttccatatggagcagttgaaa
tatgctgaaatgagagccaggcagcagctggagcagcagcatcaccagcaacagcagcat
tcacaaaatgctgccgccaccaccacgaccacaactagtattcagcagatgagctctatg
ggcatgatgcaacaaggtccaacgcccccaccaccttatccaatgatgcaccaccagatg
cagcagcagctaggtcagatgtcaggagctgggacaatgatgactgggcaggccatggca
ggtcgtatgataccgaaccttcctccaaatattccatcaggagcacctccccatccgaca
ccaaccattgtatcagcagcagcacatggtaacatgctgggcccacgaccagcagctgcc
accaatggcatgtattcaggcccagctgtacagccagatggtgtagtggtgcccacaaca
acagcacaagcatctgcagtaccataa
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