Chiloscyllium punctatum (brownbanded bambooshark): 140478671
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Entry
140478671 CDS
T11285
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03030
DNA replication
cpun03410
Base excision repair
cpun03420
Nucleotide excision repair
cpun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140478671 (rfc4)
03410 Base excision repair
140478671 (rfc4)
03420 Nucleotide excision repair
140478671 (rfc4)
03430 Mismatch repair
140478671 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpun03032
]
140478671 (rfc4)
03036 Chromosome and associated proteins [BR:
cpun03036
]
140478671 (rfc4)
03400 DNA repair and recombination proteins [BR:
cpun03400
]
140478671 (rfc4)
DNA replication proteins [BR:
cpun03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
140478671 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
140478671 (rfc4)
Chromosome and associated proteins [BR:
cpun03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
140478671 (rfc4)
DNA repair and recombination proteins [BR:
cpun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
140478671 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
140478671 (rfc4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_lid_RFC1
AAA_assoc_2
AAA_11
AAA_16
AAA_22
AAA_30
DUF815
Mg_chelatase
SLFN-g3_helicase
AAA_28
AAA_14
AAA_24
RuvB_N
AAA_19
Gp44_lid
ResIII
VipD-like_C
AAA_5
AAA_7
Motif
Other DBs
NCBI-GeneID:
140478671
NCBI-ProteinID:
XP_072428016
LinkDB
All DBs
Position
6:complement(4030446..4066017)
Genome browser
AA seq
360 aa
AA seq
DB search
MQAFLKGPGVNSSKPVKEKAAAGTSGENKKQKPVPWVEKYRPKCVSEVAFQEEVVAVLKK
SLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELYRKRILELNASDERGIQVVREKVK
NFAQLTVAGSRSDGKPAPPFKIVILDEADSMTNAAQAALRRTMERESKTTRFCLICNYIS
RIIEPLTSRCSKFRFKPLTDDIQLKRLLAICAKENIQCSDEILALLINVSEGDLRKAITY
LQCATRLTAGKGITEQVIIEIAGVVPSEIIDSLLAACHSSSFEKLETVVKNMINEGYAAT
QLINQLHDVIIDKEDLNDQQKSAITLKLAEVDKCLIDGADEYLQMISLSAVIMQQFTQTT
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttttttaaaaggacctggagtaaacagctcaaaaccagtgaaagaaaaagct
gcagcaggaaccagtggagagaacaaaaagcaaaaaccagttccatgggtggagaaatac
cgtccaaaatgtgtctccgaagtggcctttcaggaggaggttgtggctgtgctaaaaaag
tcactcgaaggagcagatcttcctaacttgcttttttatggacctccaggcacagggaaa
acttccacaatacttgctgcagcaagagaactctttggcccagagttataccggaagaga
attcttgagctaaatgcctccgatgaacgtggtatccaggttgttcgagaaaaagtgaaa
aattttgcacagttgactgtagctggctctcgctcagatggaaagcctgctccaccattt
aaaattgtcatcttagatgaagccgattccatgacgaatgccgcacaagctgctcttcgc
cggacaatggaaagagaatcgaaaaccacccgcttctgcctcatctgtaactacatcagc
aggataattgaaccactaacatctcgatgttcaaagttccgttttaaacctttgacagat
gatatacagctgaaaaggttgctggccatctgtgcgaaggagaatatacagtgcagcgat
gaaatcctcgctctgcttatcaatgtgtctgaaggagatttgaggaaggcaataacttac
ctgcagtgtgcaacaagactcacagcaggaaaaggcatcacggagcaagtcatcattgaa
attgctggggttgtgccatcggaaataattgacagtttgttagctgcttgccatagcagc
tcctttgaaaaactggaaactgtagtaaaaaatatgattaatgaaggctatgctgcaaca
cagttaatcaatcaactacatgacgtcattattgataaagaggatcttaacgatcaacag
aaatcagcaatcacgctaaaactggcagaagttgacaagtgtttaatcgatggtgctgat
gagtatctgcagatgatcagcctttctgcagttattatgcaacagtttacacagaccact
taa
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