Chiloscyllium punctatum (brownbanded bambooshark): 140482881
Help
Entry
140482881 CDS
T11285
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
140482881 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpun03400
]
140482881 (msh6)
DNA repair and recombination proteins [BR:
cpun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
140482881 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
140482881
NCBI-ProteinID:
XP_072436706
LinkDB
All DBs
Position
11:complement(34017283..34036862)
Genome browser
AA seq
1375 aa
AA seq
DB search
MSRQSTLFSFFPKSPPLSASSSAAKASPEASCPPAKVKAQTSPRENGTGARPAKRCRAAA
ASPTVSPLFAGGERKAGKKQAAPGPPALGQACEFAPGDLVWAKLEGYPWWPSLVYNHPTA
EEYLRGKGKSLRIHVQFFDDPPTRGWVSVKYVRSYTGPGCKEAQRGGIYFSGKPEIRRAV
ELADAAFPKSREKRLELAVCTEPSEPEEEEEEEQEMQVTDQSAASEEDKENNSEDEKVKG
QRSRTTRSASTKAKRRRLVVESDSDAESSEEEFRPEQHDGSSEECSSGVDEKELSEPDPE
TDPDSPIKTPFKRKRGGTARKKSASSSPSEVPKRAATAAVSSSTKSRLSAFSAPETFECQ
SNSGGAGSPSPATTWDHEKLEWLKPGKRKDAKRRKEGEPEYDPSTLYVPDDFLCRCTPGM
RRWWELKSQMFDTVIFYKVGKFYELYHMDAVTGVTELGLSFMKGSWAHSGFPEIAFGRFS
DALVQKGYKVARVEQTETPEMMEARCKSLHHPTKFDRVVRREVCRVITKGTQTYSVLDGS
AAESCSKYLLCFKEAAASTEPAGQACSYGVCFVDTSVGKFHVGQFVDDRHCSRLRTLLAH
HPPVQVLFERGNPSAETRKILKGCLGSALQEGLQPASQFWDASKTLRVLAEEGYFSEVKE
PGVPLPDALRPMVSETDSLGLTPGEDYDLALSALGACVFYLKRCLVDQELLSMANFEEYT
PVDVSTDCAKGSPTRPAVGRQRLVLDGVTLTNLELLQNATTGTREGTLLEQLDHCCTYFG
KRLLKQWLCAPLCQPVTIEDRLNAIEDLMAVPSTVAELVELLKKVPDLERLLSRIHSVGS
PLKSKDHPDSRAVFYEETSYSKKKIADFLSSLEGFKVFQEVLRVVEPSVAAFRSQLLRQI
VNLKGSTAEGLFPDLSAELKRWDTAFDHQKARNTGVITPKAGFDPDYDQALADIKQTERE
LQEYLEAQRVRLCCRSMVYWGSGRNRYQLEVPENIADRRVPEDYELKSTKKGYKRYWTKA
IEKLLDTMNNAEERRDSALQDCMRRLFYNFDKNYKNWQAAVDCMAVLDVLLSLTHYSQTG
DGPMCRPVVMLADDDARPFLELRASRHPCVLKTFFGDFIPNDVFIGCTDVDDLDGGPSNN
QASCLLVTGPNMGGKSTLMRQVGLLIILAQLGCYVPAESCKFNPVDRVFTRLGASDRIMS
GESTFFVELSETSSILQHATPHSLVLLDELGRGTATYDGTAIASAVVKELAENIKCRTLF
STHYHSLVEDFSCSTAVSLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARL
ANIPEEIIQKGHKKAKEFEKTTVSFRLFKEMCFLVEDPNINFLTLKPILQKIAEI
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcagagcaccctgttcagcttctttccgaaatctccgccgctcagcgcctcc
tcctcggcggccaaggccagccctgaagcctcttgtccccccgctaaggttaaagcccag
acttccccccgggagaatggcaccggggcccggccggccaagaggtgccgagctgcggct
gcctcccccaccgtcagtccgctgttcgccggcggagagaggaaagcgggcaagaagcag
gcggccccggggcctccggctctcggtcaagcttgtgaatttgctccgggagatctggtg
tgggccaaactggaagggtatccgtggtggccaagcctggtgtataaccatccaactgct
gaggagtatctcaggggcaaagggaagtctctccgtattcatgtccagttctttgatgat
cctccaacaagaggctgggttagtgtgaagtatgtcaggtcgtacacaggtccggggtgt
aaggaggctcagaggggtggcatctatttcagtgggaaacctgaaatccgcagggcagtg
gagctcgcagatgctgcttttccgaaatcgagagagaaacgtttggaattggctgtgtgt
accgaaccttccgaaccagaggaggaggaggaggaggagcaggaaatgcaggtgactgac
cagtcagcagcgagcgaggaagataaagaaaataacagcgaggacgagaaggtgaaaggg
cagaggtcgaggaccacacgatcggccagcaccaaagccaagaggcggcggctggtggtg
gagtcggacagtgacgcggaaagctccgaggaggagttcaggccggagcaacatgacggg
agtagtgaggaatgcagcagcggggtcgacgagaaggagctcagtgagccggatcctgag
actgaccccgacagtccaatcaagacaccattcaagcggaaacgcggaggcacggccagg
aagaaaagcgcctccagctccccctcggaggtgcccaagagagcggcgacggcagcagtg
tcctcaagcaccaagtccagactctcggccttctctgctccagagaccttcgagtgccag
tctaacagtgggggagcgggcagtccctcgccagccaccacctgggaccacgagaagctc
gagtggttaaaaccaggcaagaggaaggacgctaagagacgaaaggagggtgagcctgaa
tatgacccgtccacactgtacgtccctgacgacttcctgtgcaggtgcaccccgggcatg
cggcggtggtgggagctgaagtcccagatgtttgacaccgtgattttctacaaagtcggc
aagttttacgagctgtaccacatggatgccgtcaccggcgtgaccgagctgggcctgtca
ttcatgaaaggcagctgggcgcactctggcttccccgagattgcctttggccgtttctcg
gatgccctggttcagaagggctacaaggtggcgcgggtggagcagacggagacgcctgag
atgatggaggcccgctgcaagtcactgcatcacccgaccaagtttgaccgggtggtccgg
cgcgaggtctgccgggtcatcaccaagggcacgcagacgtacagcgtcctggacgggagc
gcagccgagagctgcagcaagtacctgctgtgctttaaggaggcagcagcgagcactgag
ccggctggccaggcctgctcctatggagtctgcttcgtcgacacatccgtcggcaagttc
catgtgggccagttcgtggacgaccggcactgctcccgcctgcggaccctgttggcacat
caccccccggtgcaggtgctgttcgagaggggcaacccgtcggcggagaccaggaagatc
ctgaaaggctgcctgggctcggccttgcaggaaggcctgcagcctgcctcccagttctgg
gacgcctccaaaaccctccgagtgctggccgaggagggctatttcagcgaagtgaaggag
ccgggggtccctctgcctgacgctctgcggccgatggtgtccgagactgactctctcggc
ctcaccccaggcgaagactatgacctggccctctcagcccttggcgcctgtgtcttctac
ctcaagcggtgccttgtcgaccaggagctgctgtcgatggccaacttcgaggagtacact
cctgtggatgtgtctaccgattgcgcgaaggggtcccctacccgccccgctgtggggcgg
cagcgccttgtactggatggcgtcaccctgaccaacctagagctgctgcagaatgccacc
actggcactcgtgagggcaccctgctggagcagctggaccactgctgcacttactttggc
aagcggttactgaaacagtggctgtgtgccccactgtgccagcctgtcaccattgaggac
cggctcaatgccattgaggatctcatggctgtgcccagcactgtcgcggagctcgtcgag
ctgctgaagaaggtgcccgacttggagcgactcctgagccgcatccacagcgtcgggtca
ccgctgaaaagcaaggaccatcccgacagccgcgccgtgttctatgaagagaccagctac
agcaagaagaaaatcgccgacttcctgtcttccctggaaggtttcaaagtcttccaagag
gttctgcgggttgtcgagccgtctgtggctgccttccggtctcagttactcagacagatt
gtcaatctgaaaggcagcactgccgaaggcctcttccctgatctctccgctgagctgaag
aggtgggacacagcttttgaccaccagaaggcaaggaacactggagtcatcactccaaaa
gctggctttgaccctgattatgaccaggcccttgccgacatcaagcagacggagcgcgag
ctgcaggaatacctggaggcgcagcgtgtgaggctctgctgccgcagtatggtttactgg
ggctcgggccgcaatcgctatcagctggaggttcccgaaaacatcgctgatcgccgcgtg
ccggaggattatgagctgaagtcgaccaaaaagggctacaaacgttactggactaaagcg
atcgagaagctgttggatacaatgaacaatgctgaggagaggcgggacagtgctcttcag
gattgcatgaggaggcttttctacaactttgacaagaattacaaaaactggcaggcagcc
gttgactgtatggctgtccttgatgttttgttgagcctaacacactacagtcagactgga
gatgggccgatgtgcagacctgtcgtaatgcttgctgatgatgacgcgcgaccgttccta
gagcttcgagcttcacgccacccatgtgtcttaaaaaccttttttggggatttcatcccg
aatgatgtgttcattggctgcacggacgttgacgatttggacggcggtcccagtaacaac
caggcttcctgcctgcttgtgacaggccctaatatgggaggcaaatctacactcatgaga
caggttggactcctgatcatcctggcacaactggggtgctacgtgcctgctgagagctgc
aaatttaaccccgttgacagagttttcacacgtctgggagcatctgatagaatcatgtca
ggtgaaagcaccttctttgtggaactcagcgagacctccagtatcttgcaacatgcaact
ccacattcccttgtgcttctggatgaattgggccgtggtacagcaacatatgacggcaca
gcaattgctagtgcagtagtgaaggagcttgctgaaaatatcaagtgccgcactttgttt
tctacacactaccattcccttgtggaagatttctcttgctccacagcagtcagtttagga
catatggcctgcatggttgagaacgagtgcgaagatccaagtcaagaaacgatcacgttt
ctatataaatttatcaaaggagcttgtccgaagagttatggatttaatgcagcaagactt
gcaaacattcctgaggaaattatccagaaaggtcacaagaaagctaaagaatttgagaag
actacagtttccttccgacttttcaaagagatgtgctttttggttgaagacccaaatatt
aacttccttaccctaaagccgatactgcagaagattgctgaaatctga
DBGET
integrated database retrieval system
