Chiloscyllium punctatum (brownbanded bambooshark): 140486300
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Entry
140486300 CDS
T11285
Symbol
vps13a
Name
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpun04131
]
140486300 (vps13a)
Membrane trafficking [BR:
cpun04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
140486300 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
FAM91_N
DUF3261
TAF1C_beta-prop
Motif
Other DBs
NCBI-GeneID:
140486300
NCBI-ProteinID:
XP_072441353
LinkDB
All DBs
Position
2:87296521..87715962
Genome browser
AA seq
3192 aa
AA seq
DB search
MVFESLVVEVLNRFLGDYVVNLDTSQLQLGIWGGDVVLNNLEIKENALCELNVPFKVKAG
HIGKLELKIPWKNLYGQAVEATLDGIYVLIVPCASIQYDAEKEELQLQEIKQRELQRIEE
AKQKVADKENPKEGKQDTFIEKLITQVIKNLQVKITNVHIRYEDDITNPNSPLSFGISLQ
NLSLETTDERWNPCLHDQCEHTFNKLVRLDYLCAYWNVSTKMYSKSHQIQALKDLKNGVS
TSDFIPETYQFIFQPLSAQAKLEMNPRAEVDFASPKMNFQVNIQDIAIEIKRPQYLSIME
LLGSIDMMTRNLPYRKYRPDVPCRNNAKKWWAYAINGILEEKIKPALNAWSWRHIRKHRQ
TLRNYRSLYKSRIKTKKPDEELLSALEELEKDLDLFNITLARQQAEVEVMKTGHKIYRPG
AKVEDEKTGGWFDWVWNWAGTKEEKPQESKSGIDLLMTPEEKAKLYAAIGYSEAVVDPTM
PKRYEAVKLSVKLVSMSVSIREEEDQPEIMKFAVIDLSMMMIQRPGAQAIKFEAMVSTLE
VTGLPQNTDKPLLLSSRSALTENEDILLRIMFETNPLDERADQRLKVESCPLEIVYDART
VNGLVDFFRPPTDVQLVEITSATMIKLEEFRDKTATGLMYIIETQKILDLKVNLMASYVI
IPQNGFFDKSASLLVLDLGNFKMMSKNRARLPQITAGESTLEDIMARAYDCFDIQLSSVQ
LLYAKPHEDWKTARKRKVSSQHILRPMDLKLELCRAMVASDPRMPKFKVYGGLALLSVCI
SDQKLKRVLELIDSIPKPQSNTPSPSIKSHQPQKVSPNMTPRSVQKRAVQKDLYSSVLSM
ADSDDEFYDAPSSPVDDAPFLPAKAVSLQRSESIRKKQLRKQESMKNMTDFQMQFEITKI
SLGVYRYVEDTESPVLELEIVGLGTELKIRTYDMTSHTFLKEISLKCPEQTDAKNKPIYI
ITTLDNAEDDLLTIEYIKANKDGPEFKTTYRNTEQLIKVNFSSLDVYLHSEALLSSIHFL
MNLIPQSETKVSSDEQAPEIEEKKEELLTKKKTSPRSGRLEDLIKLHLCAELALLKIFIC
DPTRRIAEISIVGLDADVALRKNLSEVTAKLKNIVVLDSSEDAVYKKAVSIAGKEVFNFK
IISHVDATEGLAYSNMDVVDSCVQLTVGCIQVIFVKKFVSSVLAFLNIFQAAREAVTEAT
VQAASGVKDLAERSTRMQLDIHINAPVVVVPQSPVSKNVVVADFGFVIIQNSFSLVKQKG
STNLPPVIDSMKISLRELKLYRTIFENEAFRSEISLLQPVNLEVVVERNLSAAWYHEVPD
IKILGTLKPLHATLSQDDLIIILKSLNENLGDNSVDVVPVQAQRNSSSPSPSSAGRTVVT
AAVVETHKPFRVKTTLKLDFKLDELSLILYSQSLNPLNIVKEQRSEEDQLAEFKLHTLSS
SIKMLSDGSMNAAVKLFNCMLDDKRKAIQKATSRMIEMKLGVEKNAMMDLYYKQGREGMV
LDATIRDIHVCASMEFLLTVADFFVKANNQVSTAPVNKPAAMTSKEKVPPQAASKMELSV
HIQNPEIVFVADLTRVDAPSLVVTAQCEADINNDPELQQITATIKDLKVMACPFLKEKRK
DHITTVLQPCSVFFQSAQATSGPSFLELAVKSLMLKVSPVIINTVITITSALNPTVDSPH
EKDSEIPPDLWNKKNVKDLKLWFLEKTKNNESKNGPTAQLESTEENLKMTVDFICLTLEA
GVGHRTVPMLLAKSTFKGDVKNWSTFINLHCHLNLEVHYYNEMLAVWEPLLEPLEIENSD
EFRPWELGIKIKKKAVKSMTQSEKEEETSPAYKTVIQISSKDQLNITMSKCGLTMLNNLA
MAFTEAAGQSSDVFQKDQAPFKIKNCLGLDASVYPSDSFIIIGKHQKIPYELKDGEFLNM
DYQRTNNEKERLSNLTNTSSKLFYISLTPEGHTRADKIPLTKLGRRMYTVMHEESTVERS
IVCQIDAVRGSKRITIRSPVQIKNHFSVPFNVFEDLESYQKILGTIHPNEEFNVPLLSYR
SDLRLQLIVEDEKIYTPCEAITFGHVSTSTEILFHRKCQFSRGGDPHTLMINIVAMHDML
ASDNPDEINNAYVLHLWPSAVLQNLLPYAVSVSLTEENKSRRLILDEGHSAQLHDAVLDQ
SKLILTIIDYLEHNWAGEYLIKSNQTDIELIKFKSYIDGEETEIDIAILATYNVGHVMLS
LYSPYWMINKTGRLLQYKADDVHRKHPLDYKKPLLFSFGSKCFFEKNKVQLRITDSQLSD
SFSLDTVGSYGSVKCKGPKKEYQVGVKIDNSSFNLTRIVTFTPFHMLINRTKHKIEVTEE
CDSKWLGIDSNQCSPFWPARDSERLAVRIEGCSAGPQKFYFNKQENCLLLRLDNKFGGII
AEVHLAEHSIVVTFKDYHEGAAPFLIINHTNASRIEYHQSSSTGKGHQLEPGKAIYYTWE
DPTGSRMLSWYCGCEDSARVLSTIEDIFSEIPQENGKIYLASFFEGLQRIIVFTDDEGTF
RLTQENEKAEQAEQEIILSLQNLGISLINNSTKQEVVYIGITSSDVVWESKPKAKLRWKP
MSRKQTAQLEQVYKEYIESSPQESHIAELPCDFQALLTPNGMDMKLLQPSEVPIRRNYLP
AIKIEYTVSTHQKSLRVQIYKIQIQNQLSGAIFPFPFYPIIPPKSVTMDSAPKPFADVSI
ITRFAGKSDISRFRYFKVLIQEMDLKLDLGFLYAVMDLFTQSTDTVLAEQKLDLFKKDLE
YIQTELLTESAIDTTPVSLYEYFHISPIKLHLSFSISSGGEESNKQQEAELIPVQSLNLL
LKSIGATLTDVQDVVFKLAFFEIRYQFYTTQQLQWEVLRHYSKQAIKQLYVLVLGLDVLG
NPFGLIRDLSEGVEAFFYEPYQGAIQGPEEFMEGMALGVKALVGGAVGGIAGAASRITGA
MAKGVAAITMDEEYQQRRREAMNRQPSGIKEGITRGGKGLVSGFVSGITGIVTKPIKGAQ
KEGAAGFFKGIGKGLVGAVARPTGGIIDLASSTFQGIKRATETTEDVESLRPPRFIHEDG
VIRPYRLREGIGMQMLQKIENGRFAKCKYFGHKMINDSDLFMITKSGILFVTQGTFGQLN
CEWQYSFEEFTKEPFIVAGRRLRIEAKERVKSVFHAKEYGKIVNFKTEDDAQWILTKLQE
VRERGVRDHPKT
NT seq
9579 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtctttagtggtcgaggttttgaaccgtttcttgggggattatgtggtg
aacttggacacctcgcagttacagttaggaatttggggaggagatgtagttctcaataac
ctggaaataaaagaaaatgcattgtgtgagcttaatgttccattcaaagttaaagctggt
catattggtaaacttgaactgaaaataccatggaagaatctatatggacaagcagtggaa
gctacattggatggaatctatgtgcttattgttccatgtgccagtatccaatatgatgct
gaaaaagaggaattgcagcttcaagaaataaaacagagagaattacaaagaattgaagaa
gcgaagcaaaaggttgctgacaaagaaaatcccaaagaagggaagcaagataccttcatt
gaaaagttaattacgcaagttattaagaatttgcaggttaaaattaccaatgtccatatc
cgctatgaagatgatatcactaatccaaactccccattgtcatttggaatttcacttcaa
aacttgagtcttgagacaacagatgaaagatggaatccatgcttgcatgatcagtgtgaa
cataccttcaacaagcttgttcgattagactacctctgtgcatattggaatgtcagcacc
aaaatgtattcaaaaagccatcagattcaggctttgaaagacttaaaaaatggagtttca
acaagcgactttattccagagacttaccagttcatttttcagccattatctgcccaagct
aaacttgaaatgaatccacgggcagaagttgactttgcttcgccaaaaatgaacttccaa
gtaaatattcaagatatagcgatcgaaataaaaagacctcagtatcttagcatcatggaa
ctacttggatcaattgatatgatgacacgaaatctgccatatagaaaatatcggccagat
gttccctgtcgcaacaatgctaagaaatggtgggcatatgctataaatggcatattggaa
gagaagataaagcctgcacttaatgcttggtcatggaggcacattcgaaagcacagacaa
acattaaggaattacaggagcctttataaatcaaggatcaaaactaagaaaccagatgag
gaacttctcagtgcacttgaggaacttgaaaaagaccttgatttgttcaacattacactt
gcaagacagcaagcagaagtagaggttatgaaaacagggcataaaatttacagaccaggt
gcaaaagttgaagatgagaaaactggtggatggtttgattgggtttggaattgggcagga
acaaaagaagagaaaccacaagaatccaaatctggaattgatttattgatgacgcctgaa
gaaaaagctaaactctatgcagcaattggatatagtgaagctgtggtggatccaacaatg
cctaaaagatatgaagcagtaaaactttccgtgaagcttgttagcatgtccgtttccatt
cgagaagaagaagaccagccagagatcatgaaatttgctgtgattgacttgagcatgatg
atgatccagagaccaggagcacaagcaataaaatttgaagcaatggtaagcacactggaa
gtgacaggactacctcagaacacagacaagccactgctgctttcttcaaggagtgctttg
acagaaaatgaagatattctgctcaggatcatgttcgagaccaatccattggatgaaaga
gctgatcagcggctgaaggtggagtcatgtccactcgaaattgtatatgatgcgagaact
gtgaatgggttggttgacttctttcgacctccaacagatgttcaactggtagaaataacg
tcagctactatgataaagcttgaagaattccgtgacaaaactgcaactggcttaatgtat
attattgagacacagaaaatcctggacttaaaagtgaatctcatggcttcttacgtcatt
attccacagaatggcttttttgataaatctgccagcttattggttcttgatcttggtaat
tttaagatgatgagtaaaaatcgtgcgcgtctgccacaaattactgctggagaaagcacc
ttggaggatatcatggccagagcctatgattgttttgatatccagctgagtagtgttcag
cttctctatgctaaaccacatgaggactggaaaacagctcgcaaacgaaaggtgtcatct
cagcatatattacgacccatggatttaaagctagagttatgcagagcaatggttgcctct
gatccaagaatgccgaagtttaaagtttatggtggacttgctttactttcagtttgtatc
tcagaccaaaaacttaaacgagttttagagttgattgatagtattccgaaaccacaaagt
aatacaccatcgccatccataaaatcccatcagccacagaaagtatcacctaatatgacg
ccacggtctgttcaaaaaagagctgtacaaaaggacctatactcttctgttctgagtatg
gcagattcagatgatgaattctatgatgctccaagctcacctgtggatgatgcaccattt
ctgccagccaaagctgtttcattgcaaagatcggaaagcatacgcaagaaacaattgaga
aagcaagaatctatgaaaaatatgactgacttccaaatgcaatttgaaataacaaagatt
tcactgggagtctatcgttatgtagaggatactgaaagccctgtattagaactggaaata
gtcggacttggcacagagcttaaaatcagaacatacgatatgacttcacacacatttctg
aaagaaatcagtttaaaatgccctgagcagacagatgctaaaaacaaacccatttatatt
atcactactctggacaatgctgaagacgatctccttactattgaatatattaaggctaac
aaagatggaccagaattcaaaaccacctacagaaacactgagcaactcataaaggtgaac
ttttcatctttggatgtttatttacacagtgaagctctgctaagctccattcatttcctg
atgaaccttatcccacaatcagaaaccaaggtcagttcagacgaacaggctcctgaaatt
gaggagaagaaagaagagctccttacaaagaagaagacatctccaagaagtggaaggtta
gaagatctgatcaaacttcatttgtgtgcagaactggcacttctgaagattttcatctgt
gatccaaccagaagaattgccgaaataagcattgtgggtcttgatgctgatgtggctttg
aggaagaatttatcagaagttacagcaaagctgaagaatattgtagttttggattccagt
gaagatgcagtatacaaaaaggctgtttccattgctggaaaagaggtcttcaacttcaaa
ataatctctcatgtagatgcgacagaaggtttagcctattctaatatggatgtagttgat
agttgtgttcagttgacagttggctgtatccaagtcatctttgtaaagaagtttgtgtca
tcagtattggcattcttaaacattttccaagctgccagagaagctgtcacagaggcaact
gtccaagcagcatctggcgtgaaggatcttgcagaacggagcactagaatgcaacttgac
attcacatcaatgcacctgttgttgttgtacctcaatctcctgtgtcaaaaaacgttgtt
gttgcagactttggttttgtcattattcagaacagtttctcactggtaaaacaaaaaggt
tccactaatctcccacctgtaattgactccatgaaaatttcgttacgtgagcttaaactg
tacagaacaatatttgagaatgaagcttttcggtctgaaatctctttgcttcaacctgtt
aatctggaagttgttgttgaacgcaatttgtctgctgcttggtaccatgaggttcctgat
attaaaattcttggaaccctaaaacctctgcatgctacgctcagccaagatgatctgatc
atcatattgaaatctctgaatgaaaatttgggtgataattctgttgacgttgtacctgta
caagctcagaggaatagttcaagtccttctccaagttctgcaggaaggactgtggtaacg
gcagctgttgtagaaacacacaaacctttcagagttaaaacaacgctgaagttggatttt
aaattagatgaactttcattgatactgtacagtcagtccttgaacccgttgaacattgtt
aaagaacagagatctgaagaggaccaactagcagagttcaaattgcatacactttccagt
tcaatcaagatgctgtctgatggatccatgaatgctgctgtgaaactttttaactgtatg
ctggatgataaacgaaaggcgatacagaaagccacatcaagaatgatagaaatgaagcta
ggagttgaaaagaatgcaatgatggacctctactacaaacaaggaagagaaggaatggtt
ctagatgcaactatacgtgatattcatgtttgtgcaagtatggaatttctactcacagtg
gctgacttttttgtcaaggcaaataatcaggtctctacagctccagtgaataagccagct
gcgatgacatcaaaagaaaaagtaccaccgcaagctgcatccaaaatggagcttagtgtt
cacattcagaatccagagattgtctttgtggcagatttgaccagagtggatgccccatca
cttgtggtgaccgcacagtgtgaagctgacattaataatgatccagaacttcaacagata
actgcaactattaaagatctcaaagttatggcctgcccattcctaaaagaaaagagaaaa
gatcatattaccacggtcttacagccttgtagtgtatttttccaaagtgcacaagctaca
tctggtcccagtttcttggagttggcagtgaaatcactaatgctgaaagtatctcctgtt
attattaacaccgtgattacaatcacatctgccttaaatcccactgttgatagtccacat
gaaaaggacagtgaaataccacctgacttgtggaataagaagaatgtgaaagacttaaaa
ctctggtttttggagaaaactaaaaataatgaaagtaagaatggcccaacagcacaatta
gaatcgacagaagagaacctaaaaatgacagtggacttcatttgcttgacactcgaagca
ggtgttggacatagaactgttccaatgcttctggcaaagtcaacttttaaaggggatgtg
aaaaactggagcacattcattaatctgcattgccaccttaacttagaggtgcattactat
aatgaaatgcttgctgtgtgggaaccgctactagaaccattagaaattgaaaacagtgat
gaatttaggccttgggaacttgggattaagataaagaaaaaagctgtcaagtcaatgaca
cagagtgaaaaagaagaggaaacttctcctgcttacaaaacagttattcagatctcttca
aaagaccaacttaacattacaatgtcaaaatgtggtttgaccatgcttaacaatttggca
atggcatttactgaagctgctggccaatccagtgatgtttttcagaaagaccaggcacct
tttaaaataaagaattgccttggacttgatgcgtcagtttatcctagtgattcatttatc
atcattggcaaacatcaaaaaataccttatgaacttaaagatggagaatttctcaacatg
gactaccaacgaacaaataacgaaaaggagcggctgtcaaacttgactaatacaagcagc
aaattattttatatttcattgactcctgaaggccacactcgtgcagacaaaattccatta
actaagttaggtcgtcgaatgtatactgttatgcatgaggaatcaaccgttgaacgatcc
attgtatgtcagattgatgcagtgcgaggaagcaagagaataaccatccgttctcctgtt
cagattaagaaccatttttcagtacctttcaatgtgtttgaagatttggagtcttatcag
aagatacttggtacaatacatccaaatgaagagttcaatgttcctttgctctcttataga
tcagatcttcgtttgcagctgatagtggaagacgagaaaatatatactccctgtgaagct
atcacatttggtcatgttagcacaagtactgaaatactatttcatcgcaagtgccagttt
tcgagaggtggtgacccgcatacccttatgatcaatatagttgcaatgcatgacatgcta
gcatctgacaatcctgatgaaattaacaatgcatatgttctccatttgtggccgagtgct
gtacttcaaaaccttttgccttatgcagtcagtgtttccttaacggaggaaaataagagt
cggaggttgattctagatgaaggacattctgcccaacttcatgatgctgtactagaccaa
tccaaactgatactgactattattgactatttagaacataattgggcaggagaatacttg
atcaaaagcaatcagacagatattgaattaattaaatttaaatcatatattgatggtgaa
gaaactgaaatagatattgcaatccttgcaacatacaatgttggacatgtgatgctatca
ttgtatagtccctattggatgataaataaaactggacgactgcttcagtacaaagctgat
gatgttcatcgtaaacatcctttggactacaaaaagcctctacttttctcttttggatct
aaatgcttttttgaaaagaataaagttcagcttaggataactgacagccaattatcagat
tcattttctctggacacagtgggtagttatggctctgttaaatgcaaaggaccaaaaaag
gagtatcaggttggtgtgaaaatagacaacagcagctttaatctaacaagaattgttacc
tttacaccatttcacatgctaatcaatcgaacgaagcacaagattgaagttactgaagaa
tgtgactcaaagtggttgggcattgattcaaaccagtgcagcccattctggcctgccaga
gattctgagagattagcagttcgaattgaaggatgcagtgctgggccccaaaagttttac
ttcaacaaacaagaaaattgtcttttactgcgtctggacaataagtttggaggtatcata
gcagaagtacacttggcagaacattcgatagtggtgacttttaaggactatcatgaaggg
gctgctccattcctcattattaaccacacaaatgcaagcaggatcgagtatcatcagagc
agttcaactggaaagggacatcaactagagccaggtaaggcaatctactatacctgggaa
gatccaacaggatcaagaatgctgagctggtactgtggatgtgaagattcagcaagagtg
ctgagtacaatcgaggatatattctcagagattcctcaagaaaatgggaagatttattta
gcatccttctttgagggtctgcagagaatcattgtgttcacggatgatgaaggaacattc
agacttactcaagaaaatgagaaagcagagcaagcagaacaggagatcattctgtcattg
cagaacttggggatttcattgattaataattcaacaaagcaagaagtggtctacattggt
ataacaagttctgatgttgtttgggaaagtaaacccaaggcgaaattgcgctggaaacca
atgagtagaaagcaaacagctcagctggagcaggtttacaaagaatatatagagtcttct
cctcaagagagccacattgctgaacttccatgtgattttcaggcacttttaactccaaat
ggaatggacatgaaactcttacaaccttctgaagtaccaataaggagaaattacctgcca
gctataaaaatagagtatactgtctcaactcatcagaaatctctccgagtccaaatttac
aagatccagatacaaaatcagctgtctggggccatctttccttttccgttttatccaatt
attccccccaaatcagtcaccatggattcagcaccaaagccttttgctgatgtcagtatt
atcacgaggtttgcagggaagtctgatatatctcgttttaggtattttaaagtcctaatt
caagaaatggatctgaagttagatcttggttttctttatgctgtgatggacctattcacc
caatcaacagatacagttcttgcagagcaaaagctggatctattcaaaaaggaccttgag
tatattcaaacagagctgttgactgaatctgctattgacaccacacctgtcagtctttat
gagtatttccatatttcacctatcaaactacatttgagcttctccattagttctggagga
gaagaaagtaacaaacaacaagaagcagaactgatcccagtgcaatctctgaacctgttg
ctgaaaagcattggagcaactctcactgacgtacaagatgttgtcttcaagcttgcattt
tttgaaatccgttatcagttttatactacacaacaacttcagtgggaggtactccgacat
tactccaagcaggcaatcaagcaattgtatgtgcttgtacttggactagatgtcttaggc
aatccttttggtttaatcagagatctatcagaaggagttgaagcctttttctatgaacct
tatcagggagcaattcagggacctgaggagttcatggaaggaatggccttgggtgtaaag
gcattggtaggaggtgctgttggtggtattgcaggtgctgcttctagaataactggtgca
atggcaaaaggtgtagctgctataacaatggatgaagaataccagcaaaggcgtagggag
gccatgaacagacagccaagtggaattaaagaaggcattacacgtggaggaaaaggcttg
gtgtcgggatttgtgagtggaatcacaggaatagtgacaaaacctattaaaggtgcacag
aaagaaggtgcagctggtttcttcaaaggtattggcaagggcttggttggggctgttgca
agacccaccggaggcatcatagacctagccagcagcacttttcaagggatcaaaagagct
acagaaacaacagaagatgttgagagccttcgcccacctcgatttattcatgaagatgga
gtaattagaccatacaggttgagagagggaattggcatgcaaatgttacagaaaattgaa
aatggaagatttgccaaatgcaagtactttgggcataagatgattaatgattcagacttg
tttatgattacaaaaagtggtatcttgtttgtaacacaaggaacatttgggcagctgaac
tgtgaatggcagtatagcttcgaggaattcacgaaagaaccttttattgttgctggaagg
agattacgtattgaagccaaagaacgtgtgaaatctgtattccatgcaaaagaatatgga
aaaattgtgaatttcaaaactgaagatgatgcacagtggattctgacaaaattgcaagaa
gtgcgagaaagaggagtacgtgatcatccaaagacatga
DBGET
integrated database retrieval system
