Chiloscyllium punctatum (brownbanded bambooshark): 140491579
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Entry
140491579 CDS
T11285
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03030
DNA replication
cpun03420
Nucleotide excision repair
cpun03430
Mismatch repair
cpun03440
Homologous recombination
cpun03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140491579 (rpa1)
03420 Nucleotide excision repair
140491579 (rpa1)
03430 Mismatch repair
140491579 (rpa1)
03440 Homologous recombination
140491579 (rpa1)
03460 Fanconi anemia pathway
140491579 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpun03000
]
140491579 (rpa1)
03032 DNA replication proteins [BR:
cpun03032
]
140491579 (rpa1)
03400 DNA repair and recombination proteins [BR:
cpun03400
]
140491579 (rpa1)
Transcription factors [BR:
cpun03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
140491579 (rpa1)
DNA replication proteins [BR:
cpun03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
140491579 (rpa1)
DNA repair and recombination proteins [BR:
cpun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
140491579 (rpa1)
MMR (mismatch excision repair)
140491579 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
140491579 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
140491579
NCBI-ProteinID:
XP_072446084
LinkDB
All DBs
Position
19:87093911..87184036
Genome browser
AA seq
613 aa
AA seq
DB search
MAIRLSEGAISSIVQGGTPSQPLLQVISIRRITNGPPRYRVLMSDGIHTLSSFLLATQLN
YMGDEGLIAVNCVCQINRFICNTMKDGRRAVVIVDLKVVKPADQVNGRIGNPVPINEGQA
QQSAALANQSAAKPMQNGYAPDTASVHSTLAKSESRISSKPSGIRGPPSSSAGSQTKVVP
IACLNPYQSKWTIRARVTNKSQIRTWSNSRGEGKLFSIELLDESGEIRATAFTEQVDKYF
PLIEVNKVYYVSKGTLKTANKQYTSVKNDYEMTFTNETTVIPCDDSDDLPTVQFEFVPID
QLENKNKDTMLDVIGVCKSFEDVTKITVKSSNREVSKRNVYLLDMSGKIVSTTLWGEDAE
KFDGSQQPVVAIKGARLSDFGGRSLSVLSSSMILINPDIPEAFKLRAWFDTDGQIVEGTS
ISDVKGSSFGGGNTNWKMLLEVKNENLGHGDKADYYTTVGTIVYLKKENCMYQACPTPEC
NKKVVDQQNGLYRCEKCDREFPNFKYRMILSINLADFGENQWVTCFQETAEAILGQNATY
LGELKESNEQAFEEIFQNANFRSYTCRIRVKLETYNDESRIKATMMDVKPVDHKEYSKRL
IMNIRKHAATQAY
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcgattcgactgtcggagggggcaatttcgtcgatagttcaaggaggaacgccttca
cagccacttttacaagttattagtatccgacgcattacaaatggccccccaaggtatcgc
gtgctgatgagtgatggaatccatacactgtcctctttcctgcttgcaactcagctgaat
tacatgggagatgagggtcttattgcagtaaactgtgtctgccagatcaaccggttcatc
tgtaatacaatgaaggatggaaggcgtgctgttgtgattgttgacttaaaggttgtcaaa
ccagctgatcaggtgaatgggagaattggtaatccagtgccaatcaatgaaggtcaggca
cagcaatcagctgctcttgccaatcagtcagcagccaaaccaatgcaaaatggctatgca
cctgatactgcttcagtacacagtaccctagcaaaatctgaaagcaggatatcaagcaag
cctagtggtatcaggggaccacccagcagctctgcaggatcacagaccaaagtggtgccc
attgcttgccttaacccctaccagtcaaagtggacaattcgggctcgtgttaccaataag
agtcaaattagaacgtggagcaactcccgtggagagggaaagctattttccattgagctg
ctggatgaaagtggtgaaattagagccacagctttcactgagcaagtggataagtacttc
ccacttattgaagtgaataaggtgtattacgtgtcaaaaggaacattgaagacagccaat
aaacagtatacatctgtgaagaatgattatgaaatgacttttactaatgagaccactgtg
atcccttgtgatgactcagatgatttgccaacagtccaatttgagtttgtaccaatagat
cagctggaaaataaaaacaaggatacaatgcttgatgtaattggagtctgcaagtcattt
gaagatgtcactaagataacagtgaagtcaagcaatcgagaagtctccaagaggaatgtt
tatttgttggatatgagtggaaaaattgtctctactacgctgtggggtgaggatgctgag
aagtttgatggatcacagcagccggtggtggctattaaaggagcccgactttcagatttt
ggtggccgatccctatctgttttgtcatccagcatgatcttgattaaccctgatattcca
gaggcttttaagctgagagcatggtttgatacagatggccaaatagtggaaggaacatcc
atttcagatgtaaagggtagttcgtttggtggaggcaataccaactggaagatgttgctt
gaagtaaaaaatgagaacttgggtcatggagataaggctgattattataccactgtaggt
acaattgtgtatttgaagaaggaaaactgtatgtaccaggcatgtcccactccagagtgc
aacaagaaggttgtggatcagcagaatggtctttataggtgtgagaaatgtgatcgtgaa
tttcccaacttcaaatatcgtatgattttgtcaataaatctagcagattttggagaaaac
caatgggtcacatgtttccaggagacagcagaggcaattcttggtcagaatgctacttat
cttggagaactaaaggaatcaaatgaacaagcctttgaagaaatattccagaatgcaaat
tttcggtcatacacctgcaggatccgtgtcaaacttgaaacttacaatgatgaatctcgc
atcaaagcgacaatgatggatgtgaaaccagtggaccataaggagtacagcaagagactg
ataatgaatattaggaaacatgcagctacacaagcttactga
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