Chiloscyllium punctatum (brownbanded bambooshark): 140492084
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Entry
140492084 CDS
T11285
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140492084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140492084
Enzymes [BR:
cpun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
140492084
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140492084
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140492084
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_6
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
140492084
NCBI-ProteinID:
XP_072446888
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All DBs
Position
20:42599938..42685221
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AA seq
558 aa
AA seq
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MPKEKYDPSDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSSSLWSLTHLTALHLGD
NSLSRIPPDIAKLHNLVYLDLSCNKIRSLPSELGNMVSLRELLLNNNLLRVLPFELGKLF
QLQTLGLKGNPLAQEILSLYQEPDGTRRLLNYLLDNLAGTSKRIQPEQPPPRSWIVLQEP
ERTHPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILNCNADIISLQE
VETEQYFAFFLVELKEHGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSLIQNHTV
EFNQLAMANSDGSEAMLNRVMTKDNIGVAVLLELQKDSFELFPGKSFHGVEKQLILIANA
HMHWDPEYSDVKLIQTMMFLSEVKNIIEKASRTLRPGAVTGDLNVIPLVLCADLNSLPDS
GVVEYLATGGVDTNHKDFKELRYSDCLMKFSNIGKNGTPSARITHGFKLKSAYENGLMPY
TNYTFDFKGIIDYIFYSKPHINILGVLGPLDPNWLIENSISGCPHPHVPSDHFSLFAQLE
LLLPFVSPVNGIHLPGRR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagaaaaatatgatccatctgatccccggagaatgtatacaattatgtcttca
gaagaagcagcaaatgggaaaaaatcatactgggcagagttggaaatcagtgggagagtt
agaagtttgagttcgtcattatggtcattgacacacttgactgcattgcatcttggtgac
aactccctttcacgtattcctcctgatattgccaaactgcataatctggtttatttagac
ctatcgtgcaacaagatacggagtttaccatctgagcttggaaacatggtatcactcagg
gaactgcttttgaacaataacctgttacgggttctaccatttgagcttggaaaattgttt
cagttacagaccctgggtttgaaaggaaatcctttggcacaagaaattcttagcctctat
caggaaccagatggaactcgtaggttactgaattacttgcttgataatttggcaggtact
tcaaaaagaattcagccagaacagcctccaccaaggtcatggattgttttacaagaacca
gaacggacacatccctcagcattgttctcggtcatgtgctacaacgtattatgtgacaaa
tatgccacacgacagctatatgggtactgtccatcatgggcactgaactgggaatatagg
aaaaaatctattatgcaagaaatcttgaactgcaatgcggatattataagtcttcaggaa
gttgaaactgaacagtacttcgcttttttcctggttgaacttaaagaacatggatatgat
ggtttcttcagccccaaatccagagccaggacaatgtccgaatctgatcggaagcatgta
gatggctgtgcaatattctataagactgaaaaatttagtctgattcagaaccacactgtt
gaattcaaccaattggccatggcaaactcagatggttcagaagcaatgttgaacagagtt
atgacaaaagataacatcggagttgctgtactcttggagttgcagaaggattcttttgag
ctattccctgggaagtcatttcatggtgtggaaaagcagctcattcttattgcaaatgca
catatgcattgggatcctgagtattcggatgtgaaactgatacaaaccatgatgttcctg
tctgaagtgaagaatataattgaaaaggcatctcgtacactcagacctggtgctgtcaca
ggagaccttaatgtcattcctcttgtactgtgtgcagatctcaattcactgccagattca
ggtgttgtagaatacttggccactggaggagttgatacaaaccacaaggattttaaagaa
ctgagatatagtgactgtctaatgaaattcagtaatattggaaaaaatggaactccaagt
gcaaggatcactcatggctttaagctgaagagtgcctatgagaatggccttatgccttat
acaaattatacctttgacttcaaaggtattattgactacatcttctactcaaagcctcat
attaacatactgggtgtccttggacctttggatcctaattggctgattgaaaacagcatc
agcggctgcccacatccacatgtcccatctgaccatttctcactttttgcacaactggag
cttttactgccctttgtgtcaccagtaaatggtatccatctgccaggcagaaggtag
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