Chiloscyllium punctatum (brownbanded bambooshark): 140494836
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Entry
140494836 CDS
T11285
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03013
Nucleocytoplasmic transport
cpun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140494836 (upf1)
03015 mRNA surveillance pathway
140494836 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140494836 (upf1)
Enzymes [BR:
cpun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
140494836 (upf1)
5.6.2.5 RNA 5'-3' helicase
140494836 (upf1)
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140494836 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
140494836 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
140494836
NCBI-ProteinID:
XP_072450604
LinkDB
All DBs
Position
24:complement(89094208..89171001)
Genome browser
AA seq
1103 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQSQGPIEGQVNG
PDGVLQNGAIDDAVAKASQLLPELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDSILYYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSGQAGRPSNMYFQTHDQIGMIGASPSH
VAAMNIPIPFNLMMPPMPPPGYFGQANGPAAGRGIAKGKVGRGARQRNRGMGNQLNSQSN
LPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGVTGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacgcgtacgggccgagctcacagaccctcaccttcctggacacggaggag
gccgagctgctgggggccgatacgcagggctccgagttcgagttcaccgacttcacttta
ccgtcacagacacaaacacagggccagagccaagggcccatcgaaggccaggtgaatgga
ccagatggggttctccagaatggagcaattgatgatgctgttgccaaagcaagtcagtta
ttaccagaactgaactttgaagaggatgaagaggatacgtactacacaaaggatcttcct
ttgcatgcctgcagttattgcggaattcatgatccagcctgtgttgtttactgcaacacc
agcaagaagtggttctgtaatggccgtggaaacacctctggcagccatattgtaaatcat
ctggtgagagccaagtgcaaggaagtgactcttcacaaagatgggccattgggagagact
gtcctggagtgttacaattgtggttgcaggaacgtgttcctcctgggtttcatccctgct
aaggctgactctgtggtggtgctcctatgcagacagccatgtgccagtcagagcagcctg
aaagatatcaactgggatagttcacagtggcaaccactaatccaggaccgatgctttctg
tcttggttggtaaagataccttcagagcaggaacaattgcgagcccgtcagatcactgca
cagcagatcaacaaattggaggagctctggaaggataatccttctgctacccttgaagac
ttggagaagcctggagtggatgaagagcctcagcatgtactacttcgttacgaggatgct
tatcaataccagaacatcttcggtccactggtcaagctggaggctgactatgacaaaaag
ctaaaggaatcgcagactcaggacaatatcactgtaagatgggatctgggtctgaacaag
aaaaggattgcatacttcaccttgccgaagacggactctgacatgcgcctgatgcagggt
gatgaaatctgtctgcgctacaagggtgacctggcacctctttggaaagggatcggccac
gtgatcaaagtcccggacagtatcctttattatggggatgagatcgctattgaattgcgc
agcagtgttggagctccagttgaagtaacccacaacttccaggtggattttgtctggaaa
tcaacttcatttgacagaatgcagagtgcattaaaaacctttgcagtggatgagacctct
gtgtctggctacatttaccacaaattgcttggccatgaggtggaggatgtgattattaaa
tgccagctgcccaaacgcttcactgcccatggtttgcctgaccttaatcactctcaggtt
tatgctgtgaagactgttctgcagcgtcccctcagtctaatccaaggaccaccaggcact
gggaaaactgtcacctctgctacgatagtttatcatctggccaggcaaggcaatggccct
gtcctggtatgcgctccgagtaacattgccgtggaccagttgactgagaagattcatcat
acaggtctgaaggtggtgcgtctctgtgccaagagtcgtgaggctattgattcaccagtc
tctttcctggctctgcataatcaaatccgtaacatggatagtatgcctgaattgcaaaaa
ttgcagcagttaaaggatgagactggcgagttgtcatctgcagatgagaagcgctaccgt
gcactcaaaaggacagctgagcgggaactgctgatgaatgcagatgttatttgctgtacc
tgcgttggagctggtgacccacgcctggctaagatgcagttccgttccattctcattgac
gagagcacacaggccacagagcctgaatgtatggtccctgtagtgctgggagcaaagcag
ctgatcttggtgggtgaccattgccagcttggtccagtggttatgtgtaagaaagctgcg
aaagctggtctgtctcagtcgctttttgagcgtctggttgttctggggatcagaccaatt
cgtctgcaggttcaataccggatgcatccagctctcagtgcctttccatccaacatcttc
tatgagggctcactgcaaaatggtgtcacagcagcggatcgcattaagaaaggctttgac
ttccagtggccacagccagacaagccaatgttcttctatgtaacccagggccaggaggaa
attgctagctcggggacctcctacctcaataggactgaggcagccaatgtagagaagatc
accaccaaactgctgaaggcaggtgccaagccagatcaaatcggtatcatcacaccatat
gaggggcagcgatcctacctggtgcagtacatgcagttcagtggttcccttcacaccaaa
ctctatcaggaggtggaaattgccagtgttgatgcgttccaaggccgagagaaggacttc
atcatcctatcctgtgtccgagccaatgagcatcaaggcattggatttctcaatgacccc
cggcgattgaatgtggccctcacaagagcgagatatggtgtgattattgtgggaaatcca
aaggctttatccaaacagccactgtggaatcacctgctgaattattacaaagaacagaaa
gtgctggtggagggaccactgaataatctccgcgagagtctaatgcaattcagcaaacca
cggaaacttgtcaacaccatcaatccgggagcccggttcatgacgacagctatgtatgat
gctcgagaagctattatcccaggctctgtatatgacaggagtggccaggcaggtcgtcca
tccaacatgtactttcaaacccatgaccagattgggatgattggagccagccccagtcat
gttgctgcaatgaatattcccattccctttaatctgatgatgcccccaatgccacctcct
gggtactttggacaagcaaatggaccagcagcaggtcgtggaattgcaaaaggaaaagtg
ggccgtggggctcgccaacgaaaccgtggcatggggaaccagctgaacagccagtcaaat
ctgccaaacagccaagccagtcaggatgtggtgtctcagccattctctcaagggcctctg
acccagggctacatctcaatgagccagccttcacaaatgagccagcctggcctttctcag
ccagaactctctcaggatagttacctgggcgatgagttcaagtcgcagattgacgtggcc
ttgtcgcaggattccacttaccagggcgaacgtgcatatcaacatggggtgactgggctg
tcacagtactag
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integrated database retrieval system
