Chiloscyllium punctatum (brownbanded bambooshark): 140496021
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Entry
140496021 CDS
T11285
Symbol
col4a6
Name
(RefSeq) uncharacterized protein col4a6 isoform X1
KO
K06237
collagen type IV alpha
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun04382
Cornified envelope formation
cpun04510
Focal adhesion
cpun04512
ECM-receptor interaction
cpun04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140496021 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
140496021 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
140496021 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
140496021 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpun04147
]
140496021 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
cpun00536
]
140496021 (col4a6)
Exosome [BR:
cpun04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
140496021 (col4a6)
Glycosaminoglycan binding proteins [BR:
cpun00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140496021 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
140496021
NCBI-ProteinID:
XP_072451556
LinkDB
All DBs
Position
25:66167992..66586162
Genome browser
AA seq
1705 aa
AA seq
DB search
MTDWILLVVLGSLAADLVRAGAKNAYTGPCAGRDCSRGCQCLPEKGARGQPGLIGPQGRS
GPPGFSGPEGLRGPKGEKGNPGNPGAGGMKGEKGPIGVPGFVGMNGIPGHPGQQGPRGRP
GLDGCNGTIGSPGFPGSAGFPGSPGFPGETGLKGAKGEPIQISGNRDELRGEPGLPGLDG
VPGPAGSPGSDGAVGPRGQPGLPGRPGPPGLPGLKGNMGLGFQGQKGGKGDVGLPGPPGP
PPATGQLEFGGQPGFPKGDKGEKGDMGSPGPRGEFGFPGLPGYSDIVRAKGEKGIPGLPG
PRGSFGLDGSPGIPGKKGQPGFPGARVRDGYPGMKGDQGDVGPPGPPAYIDGSGTLIKGP
PGDSGSPGFPGPPGIQGLPGSLGLPGSPGFPAQVQGSKGLPGFSGVKGPKGEKGAPGRMI
FSQPGPQGPPGLPGPPGPPGLPGPSGSRTRVTGPVGPPGLPGPAGPPGFRGSKGYKGEPG
ACACNGVITGNGIQGPPGPPGEPGKPGFNSGKGQCGDPGPPGPPGQTGPPGVPGVPGGLG
PKGQKGDSSGISAKGQKGDPGNPGPRGPSGTPGKPGNDGFPGLPGPPGEPGDSGIGIHGA
KGLPGRRGPKGPPGEMGTPGVGFPGPPGFQGPPGDPGIDGIPGPPGLPGAPGDCCCGETA
GEGDLHTEGGITLPCVIPGNAGLRGRPGVTGRPGPKGRPGFSGSPGRPGIDGPKGPPGDP
GLLGEPGRPGFPGPPGDQGRPGLPGLDGNEGSPGKRGTPGFPGQKGRPGDVYGAERGAPG
QPGPSGKPGLKGFPGDIGFPGAKGVDGRPGFSSQKGERGNPGYPGSQGLPGPPGPNGPGV
IPGFPGEMGRPGELGQPGFPGPKGSAGDRGPPGPAGMKGFPGFPGDRGLPGSPGRPGPPG
EPGRRAQFNRYGLKGEKGSPGVVGFPGIPGRQGQPGFDGSKGEMGSPGRPGFPGSIGRKG
MKGDRGDVGFPGPPPPLVGGFPGPRGDPGNPGKQGFSGMRGNKGLPGPIGRPGLPGPSGH
PGFEKGRPGDQGPPGYPGSLGQPGPKGSFGINGFPGSTGEKGNDGPPGLPGYPGELGFVG
PKGEPGDRLTVIGHMGRKGERGQPGYPGGRGQTGLRGDPGLSGSPGLPGLKGLPGETGRP
AGPGPPGLQGMAGTPGYQGSRGYPGPPGPPGQLSQVGQKGLPGSPGLDGLNGLPGPKGPR
GTPGAVLAAPPGPPGLPGLKGEYGAPGIGVGAPGYPGQKGPRGDPGHAGSMGPPGKPGPP
GSTIPSNIPGKPGDVGPPGYDGEQGPSGPIGPPGPPGLGFERGDPGDPGFPGTPGRQGAR
GDIGSPGLPGVPGLPGFKGERPEQSVMGFPGTNGPPGDPGYPGPKGDTGLEGFPGEQGLP
GAVSEIILASPVPGPPGLPGPAGLSGSSGNQGIPGYLGFPGVKGQPGKSGRVGPNGLPGL
PGMSGDPGLKGYPGPPGLEGNPGKPGTAGLPGMPARSVNVGYTLVKHSQSDSVPPCPLGM
NRLWDGYSLLFVEGQEKTHNQDLGMAGSCLPRFTTMPFLYCNVDEVCHYANRNDKSYWLS
TTAPIPMMPVSNQQIQRYISRCSVCEVPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEDFRSTPFIECNGARGTCHYFANKYSFWLTIVEEGQQFVES
PPSETLKAGQLRTRVSRCQVCIKYL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattggatcctacttgtggtcctcggctctttggctgctgacttggtccgagcg
ggggcgaagaatgcttacaccgggccatgtgcgggtcgagactgcagcagaggttgccaa
tgtttgccagagaagggggcaaggggtcagcctggactgattgggccacagggacgcagt
gggcctccagggttttctggaccagagggattaaggggaccgaaaggtgaaaaaggtaac
cctggtaacccgggagctggaggcatgaagggagaaaagggtccaatcggtgtgccagga
tttgtcgggatgaatgggattccaggtcacccaggtcagcaaggtcctagaggacgccca
ggtctggatgggtgcaatggtaccatcggatctccaggttttcctggcagtgcaggtttt
cctgggtctccaggattcccgggtgaaacgggtctcaaaggagccaaaggagagccaatc
caaatctcaggcaaccgtgatgaactcaggggtgagccgggcctaccaggtttggacgga
gttcctggtccagcgggctctcctggatcagatggtgctgtgggtcccagaggacagccg
ggtcttccaggccgacctggtcccccaggccttccagggttgaaaggtaacatggggttg
ggattccaaggacagaaaggaggaaagggagacgtgggtctgccaggtcctccaggacca
ccacctgccaccgggcaacttgagtttggtggacaacctggatttccaaaaggggacaaa
ggtgaaaagggtgatatgggatcacctggtcctcgtggagagtttggatttcctggcctt
ccgggatattcggatatagtgagagccaaaggagagaaaggaatccctggtctcccaggc
ccaaggggatcttttggtttagatggatcacctggaattccaggaaagaaaggccaacca
ggcttccctggagcacgcgtaagagatggttatccaggaatgaagggtgaccagggtgat
gtgggtccaccaggacccccagcttacatagatggaagtggtactcttattaaaggtccc
cccggagattcaggttcaccagggttcccaggccctccaggaatccaaggcttaccaggt
tcactgggattgccaggatctccaggctttccagcacaagttcaaggctccaagggttta
ccaggattttcaggtgttaaaggacctaaaggcgagaaaggagcaccaggaagaatgata
ttctcacaaccaggaccacaagggccaccaggattaccaggcccacctggacctcctggc
ctaccaggtccttcaggtagtcggaccagagtcactggaccagttggtcctccaggattg
cctggaccagccggaccaccaggattccggggaagtaaaggctataagggtgagccaggt
gcttgtgcatgcaatggagtgataactgggaatggaattcaaggaccccctggcccacct
ggtgaaccaggaaagccgggtttcaatagtggcaaaggccagtgtggagacccaggaccc
ccaggacctccggggcaaacaggccctccaggcgttccaggtgtgccaggaggattaggt
ccaaaaggacagaagggagactcatcaggtatatcagcaaaagggcaaaaaggagatccc
ggtaatccaggcccaaggggaccttcaggcactccagggaaaccaggaaatgatggcttc
ccaggtttaccaggacctccaggtgaacctggtgacagtggaataggcattcatggtgct
aaaggtcttccaggcaggcgtggtccaaagggtcccccaggtgagatgggtacaccaggc
gttggattcccaggccctccaggtttccagggtcctccaggtgatccaggaattgatggt
ataccaggaccaccaggattaccaggggcaccaggtgactgttgctgcggggaaaccgct
ggggaaggcgaccttcatacagagggaggaatcactctgccctgtgtgatcccaggcaat
gcaggtttgaggggtagacctggagtaacaggacgcccaggtccaaaaggtagacctggc
ttctcaggtagtccgggacgaccaggaattgatggaccaaaaggaccccctggagatcca
ggcttgttgggagaaccaggccgaccagggtttcctggaccaccaggtgaccagggacgg
cctggtctccctggactggatggaaatgaaggttctcctggaaaacggggtaccccagga
tttccaggtcagaagggacgcccaggtgatgtgtatggtgcagaaagaggtgccccagga
caaccaggtccaagtggaaaaccaggattgaaaggatttcctggagatattgggtttcca
ggagccaaaggtgttgatggtcgaccaggattttcaagtcaaaaaggtgaaagaggaaat
cccggctaccctggctctcaaggcttgcctggtcccccaggcccgaatggaccaggtgtc
atacctggtttcccaggagaaatgggaaggcccggtgagcttggacaaccaggttttcct
ggaccaaaaggttcagctggagatcgtggacccccaggtccagcgggtatgaagggattt
ccaggatttccgggagatagaggtctccctggatcaccaggccgccctggtcctccagga
gaacctggtcgtcgagctcaatttaaccgatatggattgaaaggtgagaaaggctctcct
ggtgtggttggcttcccaggcattcctggtcgacaaggccagccaggcttcgatggaagt
aaaggagaaatgggcagcccaggtagaccaggcttccccggttccataggcaggaaagga
atgaaaggtgataggggtgatgttggattccctgggcccccacctcctcttgtaggaggc
tttccaggaccaagaggtgaccctggcaatcctgggaaacaagggttttctgggatgaga
ggaaacaaaggcttgccagggccaattggtcggcctggactcccaggaccaagtggccat
cctgggttcgagaaaggtagacctggtgatcaagggcctccaggatatcctggatcacta
ggacaaccagggccgaaaggctcctttggcattaatggtttccctggatcgactggagaa
aagggtaatgatggtccgccaggtcttcctggataccctggtgaattgggttttgttggt
ccaaaaggtgaacctggtgatagactaactgtgataggccatatgggaagaaaaggagaa
cgtggacaaccagggtatccaggtggaagaggacagactggtttgcgtggtgaccctggt
ctctcaggtagccctgggctccctggacttaaaggattgccaggtgaaacaggtcgacca
gctggccccggtcctccaggtctgcaagggatggctggcactccaggataccagggatct
cgaggatatccaggtcctccaggacctccaggtcaactttctcaagtaggacagaaagga
ctcccaggctctccaggactagatggtttgaatggtttgcctggacctaaaggacccaga
ggaacaccaggtgctgttttggcggcaccgccagggcctcctggtcttcctgggttaaag
ggtgaatacggtgcaccaggcattggtgtaggcgcaccaggatatccaggacaaaaagga
cctcgaggagatccaggccatgctggatcaatgggtcctccagggaaaccgggtcctcca
ggatccaccatcccttcaaacattcctgggaagccaggtgatgttggtcctcctggatac
gatggtgaacaaggtccttcaggtccaattggtcctcctgggccaccaggcttgggtttt
gaaagaggagatcccggtgaccctggctttcctggtacccctgggcgacaaggtgcaagg
ggggacattgggtctcctggactgccaggcgttcctggtcttccaggattcaaaggtgaa
aggccagaacaaagtgtcatgggatttccaggaacaaatggccctcctggtgatccagga
tacccaggacccaaaggggatactggtcttgaaggttttccaggagaacaaggcttaccg
ggagcggtatcagaaattatactcgcgtcaccagtccccggtcccccaggtctgcctgga
cctgctggtttatctggttcttcgggaaatcaaggcatccctggttacttaggatttcca
ggtgtcaaaggccagcctgggaaatcaggtagagtgggaccaaatggtttacctggcctt
ccaggtatgtcaggagatccaggcctgaagggatatcctggaccacctggattagaaggt
aaccccgggaagccgggaacagcaggacttccaggaatgccagctcgtagtgtgaatgtg
ggctacacgctagtaaaacacagtcaatcagatagcgtgcctccctgcccattgggaatg
aacagattgtgggatggatacagcttactgtttgtggaaggtcaagaaaagactcataac
caggatttgggaatggctggctcatgcttgccccgtttcaccactatgcctttcctgtac
tgcaatgttgatgaggtgtgccactacgcaaacaggaacgacaagtcttactggctttct
accactgccccaatccccatgatgcctgtctccaaccagcagatccaacgctacatcagc
cgctgctcagtctgcgaggtgccatctcaggctattgctgtgcatagccaggacataacc
attccacagtgccctgaaggctggcggagtctgtggataggttactctttcctcatgcac
acagctgctggtgctgaaggtggaggccagtctcttgtctcgccaggctcctgcctggag
gacttccgctccacccccttcatcgaatgcaatggcgcccgcggcacgtgccactacttt
gccaacaagtacagcttctggctgaccatcgtggaggagggccagcagtttgtggaatcg
ccaccctcggagacgctgaaagcgggtcagctgcgcactcgggtcagtcgctgtcaagtc
tgcatcaagtatttgtag
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