Coniophora puteana: CONPUDRAFT_116067
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Entry
CONPUDRAFT_116067 CDS
T03134
Name
(RefSeq) DNA-dependent RNA polymerase II second largest subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cput
Coniophora puteana
Pathway
cput03020
RNA polymerase
cput03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cput00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CONPUDRAFT_116067
09124 Replication and repair
03420 Nucleotide excision repair
CONPUDRAFT_116067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cput03021
]
CONPUDRAFT_116067
03400 DNA repair and recombination proteins [BR:
cput03400
]
CONPUDRAFT_116067
Enzymes [BR:
cput01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CONPUDRAFT_116067
Transcription machinery [BR:
cput03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CONPUDRAFT_116067
DNA repair and recombination proteins [BR:
cput03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CONPUDRAFT_116067
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
19199206
NCBI-ProteinID:
XP_007763662
JGI:
Conpu1_116067
UniProt:
A0A5M3N6Z0
LinkDB
All DBs
Position
Unknown
AA seq
1228 aa
AA seq
DB search
MSQDFETSQPTYDENGYGIEEDEEDYEEITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQ
NTMQELVDENADLILDQADQHTGHETDMTRRYEIHFGQIYLSRPTVTEADGSVVPVFPQE
ARLRNLTYSAPLYIDMKKRVLTGREDPDMPGEVTWIPEDPDSENQEGTKVWIGKVPIMLR
STFCILRELQDQDLYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPIS
FLAEIRSAVEKGGKTISQFQVKMFHRSQERSLGNVMKATIPYIKVDIPIWVVFRALGVIS
DRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQ
EILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLL
ANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLKYSLATGNWGDQKKSM
ASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQAC
GLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSSAACTKVFVNGVWMGVHRDPA
NLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVEDQQLLLQKKHIKW
LNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMIAMTPEDLENSRLQSAGIDTRQS
DEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG
IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSV
IMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLI
APGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSE
GQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPS
RMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGR
KLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMI
SHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTACSQLYIPYAA
KLLFQELQSMNIAARLYTVSTGRVRDSS
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagattttgagacgtcgcaacccacctacgatgagaacgggtacgggatagag
gaggatgaggaggactatgaggaaatcacgcaggaggattgctggaccgtcatatccagt
ttcttcgatcaaaagggtctcgttcggcagcagcttgactccttcgatgaattcgttcaa
aacacaatgcaggaactcgtcgacgagaacgcagacctcattctcgaccaagcagatcag
cacaccggccacgaaacagacatgacgcgtcgctatgagattcatttcggtcaaatctat
ctttcgcgacccaccgtcacggaagcagacggttcggtggtccctgttttccctcaagaa
gctcgcttgcgcaacctgacctactcggccccactttacattgacatgaagaagagagta
ctcacgggtcgcgaggaccctgatatgcctggagaggttacttggattcctgaagacccc
gactctgagaaccaagagggaacaaaagtttggatcggcaaggtacccatcatgctacgg
tcaaccttctgtatccttcgtgaattgcaggatcaggacctttacgacttgaacgaatgt
ccgtatgactcgggaggatatttcatcatcaacggctccgaaaaggttctcattgcacaa
gaacgtatggctaccaaccacgtctatgtcttcgcgaaggcccagccctcccccatcagc
ttcctcgcggagatccgtagtgcggttgagaagggtggtaaaactatatcgcagttccag
gtgaagatgttccatcggagtcaggagcgttcgcttgggaatgtcatgaaagcaacaata
ccctatatcaaggtcgacattcctatctgggttgtattccgcgctttgggcgtcatctct
gaccgcgatattcttgagcatatctgttacgacatgcaagactcccaaatgctagaaatg
ctgaaaccgtgtatcgatgacggctttgtcattcaggaccgcgaggttgccttggatttc
attggcaatcgtgggacaaccactggtctttccagagaacgccgtatacgatatgcgcag
gaaattttgcagaaggagatgctgccacatgtctccatgtcggaaggctcagagtcgaag
aaggcctacttcttcggctatatgatacatcgacttctactggctgctatggaacgtaga
gagctggacgatcgtgaccacttcggcaagaaacgtctcgatctcgctggtcctctgctt
gccaacctgttccgcatgttgttcaagaaactcaccagggatgtgtatcgttatcttcag
aagtgtgtggaaactcacaaggaattcaacatttcgctcgcagtcaaacaccagactatc
acgaatggcctcaagtattcccttgctaccggcaactggggcgaccagaagaagtcaatg
gcctcaaaggctggtgtatctcaggtcttgaacagatatacatatgcctcgacactatcg
cacttacgccggtgtaacacgccgcttggacgtgaaggcaagattgctaagcctcgtcaa
cttcacaatacgcactggggcatggtatgtcccgccgaaacaccagaaggacaagcttgt
ggtctcgtcaagaaccttgcactcatgtcgtgtatttccgttggttcgttctcagcaccc
gtcattgaattcctggaagagtggggtctcgaatctttggaagagaacgctcactcatcg
gcggcctgtacaaaggtcttcgtcaacggtgtatggatgggggtccatcgtgaccctgcg
aacttggtcaagaccattaagaagctcaggcgaaaggatgatatcagcccggaagtctcc
gtcgttcgggatatccgggaacgcgaactgcgcctgtacacagatgccggtcgtgtttgc
cgaccactattcattgttgaggatcagcaactcctgctgcagaagaagcacatcaaatgg
ctcaaccaggggtaccgggacgatgatccgacggaggagttcaagtgggatcagttagtg
aaaggcggtgtgattgaacttctagatgcagaggaggaagagactgtgatgatcgcaatg
acaccagaagacttggagaactctagattgcagtccgctggcatcgacactcgccaaagc
gatgaagactatgaccccgcagctcgcctcaaatctggtatcaatgcacatacctggacg
cattgcgaaattcatccaagtatgatcttaggtatttgtgccagcatcatcccgttcccc
gatcacaaccagtctcctcgtaacacatatcaatctgctatgggcaagcaagctatgggc
atctacctcaccaacttccttgtccgtatggacaccatggccaacatcttgtactatcct
cagaaacctctggccacgacgcgttctatggaatacctcaagttccgagagctccctgcc
ggacagaacgcgatcgttgccatcctgtgttacagtggctacaaccaagaagattcagtc
atcatgaaccaaagctccatcgaccgtggtctgttccgtagtatctactaccgtagttac
atggatctggaaaagaagagcggtattcaacagcttgaggagtttgaaaaacctactcgt
gacaccacactgcggatgaagcatggcacatacgacaagatcgaagatgacggtctgatt
gcgcctggaactggcgtgtcaggagaagatatcatcattggaaagaccgcccccataccg
ccagacagcgaggaactggggcaacggacacgcactcacactcgccgagacgtctcgaca
cctttgaagagcactgaaaacggtatcgtcgatcaggtccttattactacgaactcggag
ggtcagaagtttgtgaaggtccgcgtgcggtcgacacgtattcctcagattggcgacaag
tttgcatctcggcacggacaaaaaggtactatcggtattacctaccgtcaagaggacatg
cctttcacggccgagggtattgttcctgacatcatcatcaatccgcacgctatcccctct
cgtatgacaatcggtcacttggttgagtgtttgctctccaaggtggcgacgttgattggt
aacgagggtgatgccactcctttcaccgatttgactgtcgagtcggtatcaacgttcctc
cgccagaagggctaccagtctcgtggcctggaagtgatgtaccacggccacactggccgg
aagctccaggcgcaggtctacctcggtcccacgtactatcagcgcttgaagcacatggtg
gacgataagatacactcccgtgcgagaggtcccgtgcagatcctcaccaggcaacctgtc
gagggtaggagtcgtgacggtggtctgcgtttcggagagatggagcgtgattgtatgatc
tcgcatggtgtcgctgcgttcttgaaggagcgtctcttcgaggccagcgacgcttatcgt
ctgcatgtatgtgatatctgtggtttgacagcaatcgccaacttgaaaaagcaaacgttt
gagtgtcgtgcttgcaaaaacaagacagcatgttctcagttgtatattccttatgcagca
aaattgctgttccaggaactgcaatctatgaacattgctgctcgactgtacaccgtttcc
actgggcgtgttagggattcgtcgtag
DBGET
integrated database retrieval system
