Coniophora puteana: CONPUDRAFT_131506
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Entry
CONPUDRAFT_131506 CDS
T03134
Name
(RefSeq) LSM-domain-containing protein
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
cput
Coniophora puteana
Pathway
cput03018
RNA degradation
cput03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cput00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CONPUDRAFT_131506
09123 Folding, sorting and degradation
03018 RNA degradation
CONPUDRAFT_131506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cput03019
]
CONPUDRAFT_131506
03041 Spliceosome [BR:
cput03041
]
CONPUDRAFT_131506
Messenger RNA biogenesis [BR:
cput03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CONPUDRAFT_131506
mRNA degradation factors
5'-3' decay
Lsm complex
CONPUDRAFT_131506
Spliceosome [BR:
cput03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CONPUDRAFT_131506
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
SAF
Motif
Other DBs
NCBI-GeneID:
19200347
NCBI-ProteinID:
XP_007773978
JGI:
Conpu1_131506
UniProt:
A0A5M3MAJ0
LinkDB
All DBs
Position
Unknown
AA seq
98 aa
AA seq
DB search
MDEDSPPPPPPNEASPPPPPVAVSGSPTDFLKGVVGKRVIVRLTSGVDYRGILSCLDGYM
NIALEQTEEHVNGSVTNRYGDAFIRGNNVLYISAAEPL
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagactcgccacccccacctccccccaacgaagcatcgccgcctcccccgcct
gttgcggtatctggatctcccaccgactttctcaagggcgtcgtcgggaaacgcgtgatc
gtgcggctgacctctggcgtagattaccgcggcatactatcatgtctcgacgggtacatg
aacatcgcgctcgagcagacggaggagcacgtcaacgggtcagtcacgaaccggtacggg
gacgccttcatccggggcaacaacgtgctgtacatctctgctgccgaaccactgtga
DBGET
integrated database retrieval system