Cryptosporidium parvum: cgd3_2620
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Entry
cgd3_2620 CDS
T00168
Name
(RefSeq) DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cpv
Cryptosporidium parvum
Pathway
cpv03020
RNA polymerase
cpv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
cgd3_2620
09124 Replication and repair
03420 Nucleotide excision repair
cgd3_2620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpv03021
]
cgd3_2620
03400 DNA repair and recombination proteins [BR:
cpv03400
]
cgd3_2620
Enzymes [BR:
cpv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
cgd3_2620
Transcription machinery [BR:
cpv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
cgd3_2620
DNA repair and recombination proteins [BR:
cpv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
cgd3_2620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
3373777
NCBI-ProteinID:
XP_626822
ApiDB_CryptoDB:
cgd3_2620
UniProt:
Q5CUJ2
LinkDB
All DBs
Position
3:662428..668136
Genome browser
AA seq
1902 aa
AA seq
DB search
RRIIQEIMSTALELNSPFSSKELKRVFSIEFGVLSPELIRKYSVLEIKVSDIYENGRPKS
GGLNDPLLGTTDYHILCETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYAC
SKLFVDTLDPKFKQIKRIKNPRLRLKKILEMRSSSSRCIISSDGSGCGFVQPTYSKEGYN
LYINQNQDENRIIDDESVDSKRLLAAEEVLTIFKRISHDDMKILGFDPVKCNPSWFINTV
IPIPPPAVRPYVQFGSDRSEDDLTLKLQQIIKLNENLKKQIRIGSPEHIISEMSTVLQYH
LITLINNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDFSARTVITGDPNL
AVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRGPHEWPGATSIIQEDGTKVDLRFSN
TSNNSNNILQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTFRLNLSVTSP
YNADFDGDEMNLHLAQSHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRK
STFLTRDKFLQLLLCIPYWNGNIPPPAILRPQPLWTGKQIITVLLAFTTDLGEPIELNLM
RDGSIVSIKQSNNSSNTDKDDSKEAIVNNPWISELDNQVIIQKGEHICGVLTKKIAGSSS
GSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDIQPQNYTLEKIMNSLEGS
KLQVQQIIRRAQKGKLDCQPGKSLIESFEAQVNQELNSARELSGTIATENLDSSKNNIVA
MVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESRGFVSNSYL
SGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVRNSNGDIIQ
FLYGEDGMAGEFIEDQVIELLQMEAAVFQHKYRHNLEHPRWGSSWAGVQPSLIKNLQFDL
ESQNILNSEYKQLVTDREQLGKDIFPDGETRQHLPININRIIQMAQQKFPQRVSDTSSSK
DWGPVYIIKKVESLLDKLLLWKNVGIINDEGNKSNFVFDSIIAEVQKNATTLLGIHIRSS
LASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFH
FAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQEQAKDVLTLLEHTMLQN
ITTIAHILYDPEQDKTIVEADKSWVSDYYEFPDDADITSRLGTWLLRIQLNNKLVTDKKL
SMKEIGDKILMEFSKDELDCIWTDDNSDELVLRLRIKNIEPTNNIRDNIHSSEENDSISP
SITSGVEEHKFLEKLMTECLSQITLRGINNIKKVYMKEEQVSRYDSVSQKMVRDNQWVLD
TDGCNLEAVLCHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYRH
LALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFGETDYLNGVSEN
VMLGQLAPYGTACFDVLIDPDKLRDTATHLEIHGEFAKLGKFSTLSQTTRSYSDSGAFES
DSFESPMSPLSPMSPLYQSYEPMSPMISGQFSPVQMTPRSPMSPVSPGGIFSPVPYSPMS
PSSPLMDYTPTSPIYAASSPTYNTEVSERARKKYKVNNTLSSYSPSSPLNSDNKISNISP
DLSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSP
TSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPSSPH
YSPTSPQYSPTSPNYNPASPNYSPTSHYSPTSPNYNPTSPNYSPSSPNYISNNSGSPGYS
PSSPQYDPIAVASVPRSPSYSVGKMVDAEYSPSSPLDETKNS
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
aggcgaattatccaggaaattatgtccacagcattggagttgaactctccatttagcagt
aaagagttaaaaagagtatttagtatcgaatttggcgtcctttcacccgaactaatacgt
aagtattccgtactcgagattaaagtatcagatatttatgaaaatggaagacctaaatca
ggtgggcttaacgacccattgttgggcacaacagactatcatattctttgcgaaacttgt
catatggatataaaaacatgtcctggccactttgcgcatattgagcttggaaagcccatg
tttcatatcggatttattactacagtacttaagcttctcagatgcgtgtgctatgcatgc
tctaagttattcgttgatacattagatcccaagtttaaacaaataaaacgcattaagaat
ccaagacttagattgaagaaaattctagaaatgagaagctcttcatccagatgtataatt
tctagtgatggttctggatgcgggtttgtccaaccaacctattcgaaagaaggatataat
ttgtatattaatcaaaatcaagatgaaaacagaattattgacgatgaaagtgttgattcg
aagaggttgctagccgcagaagaggtacttacaatttttaaaaggatatctcacgatgac
atgaagattcttggatttgatcctgtaaaatgtaatccttcttggtttattaatacggta
ataccgattcctcctccagctgttagaccatacgttcaattcggaagcgatcggagcgaa
gatgatttgactttaaaactacaacaaataatcaagttgaatgaaaatcttaaaaaacag
attcgtattgggtctcctgaacatattattagtgaaatgtcaactgtacttcaatatcat
ttaattacacttattaataacgacttacctggtttgcctcaatctagaacaaggagtaac
aggccaatcaaatctctcagagcacgtctaaaaggcaaggatggtcgcatacgcggtaac
ttaatgggtaaaagggtagatttctctgcaagaacagtaataacaggcgatcctaactta
gctgtcgaccaagttggagttccatattctattgctatgacacttacttatcctgaagtt
gttacaccatataatatagaagagctaaaggagttggtgcaaagaggaccgcatgaatgg
ccaggagcaactagtattattcaggaggacggaacaaaggttgacctaaggttttcaaat
acctcaaataattcgaataatattcttcaatatggatggaaggttgaaaggcatatgaag
aatgatgatctagtgctcttcaacaggcagcctagtctacataagatgagtattatgggt
catcgtgtaaaaattttaccttattctacatttagacttaatctttcggtaacttcgcca
tataatgcagactttgatggagatgaaatgaaccttcacctggcgcaatcgcatgagacc
cgatctgaaatcaaaaacttgatgatggttccgagacaaatagtttctcctcaaggtaac
aaacccgtaataggcatagttcaggattcattacttggaatttttcttctaacgagaaaa
tcaacctttttaactagagataaatttttacagctcttattatgtattccttattggaac
ggaaacatccctcctcctgcaatacttaggcctcagcctttatggactgggaaacagatt
attacagtgctacttgcatttacaacagacttgggtgagccaattgaattgaatttaatg
cgagatggtagtattgtatcgattaagcaatctaataactcttctaatacagataaagat
gattctaaagaagctatagttaacaatccttggatatcagagctggataatcaagtaata
atccagaagggagagcatatttgcggagtactcacaaaaaaaattgcagggtcttcttca
ggttcactaattcacattttatggaatgaaattggcccagaaaaaactggattgtttttg
acgtatactcagatggtagttaatacatggcttcttgagcacggcttcactgtaggatgt
caggacattcaaccacaaaattataccttggaaaaaataatgaactctttagaaggctca
aagttacaagttcaacaaattatcaggcgcgctcagaaaggtaaacttgattgtcagcca
ggtaagagcctaattgaatcttttgaggctcaagttaatcaggaattgaatagtgcgcgt
gagttgtctggtacgattgcaactgagaacctcgattcttctaaaaacaatattgttgca
atggtccaatgtggaagcaaagggtcaactataaatatttcacagattatggcatgcgtt
gggcagcaaaatgtcgaaggtaaacgtattccatttgggtttagggatagaagcttgcca
cattttttgaaatatgattatgggcctgaaagtcgtggttttgtttcgaactcatatctt
tcaggtcttacaccccaggaagttttttttcatgctatgggaggcagagaaggaatcatt
gatactgcttgtaaaacttcagaaacagggtatatacaaagaaggctaataaaggcaatg
gaagattgtatggtacagtatgatagaactgttaggaatagtaatggcgacattattcaa
tttctttatggagaagatggaatggcaggagagtttattgaggaccaagttatcgaacta
ctacagatggaggcagcagtgttccagcacaagtatcgtcacaatcttgaacatccgaga
tggggttctagctgggctggtgtccaaccttccttgataaaaaatctacaatttgatcta
gaatctcagaatatactgaactccgagtataaacaacttgtaacagaccgcgagcagctt
gggaaagacattttcccagatggtgaaacaagacaacatcttccgattaatatcaataga
ataattcaaatggctcaacaaaagtttccacaaagggtaagtgatacgtcatcgagcaag
gattgggggccagtttacatcataaaaaaggttgaatcattgcttgataaactattgctt
tggaagaacgtcgggattatcaatgatgaaggcaataaatctaattttgtatttgatagt
attattgctgaagttcaaaagaatgccacaactttgctagggatacatattagaagctct
ttagctagtaaaaaaatattagaggttgataggcttggaccaactgcatttgagtggata
cttggggaaattgaacatcagttttatagaagtcttgcacactccggtgagatggttggc
actatagcagcacagtcaattggagaacctgcaacgcaaatgacattaaataccttccac
tttgctggtgtgggctcaaaaaatgtaactctcggtgttccaaggctgagagagctaatt
aatgttgcaaaaaatgttagaacaccaaccttaactgtttatcttgaaagcgggattgca
aacgaccaagaacaggcaaaagatgtattaacattattagaacatacgatgctacaaaac
attacgactattgcgcacattttatatgacccagaacaagacaagactattgtcgaagca
gataagagttgggttagtgattattatgaatttccggatgatgcggatattacaagcaga
cttggtacttggctattaagaattcagttgaataacaagcttgttactgacaaaaaactg
tcaatgaaagaaattggtgacaaaattttaatggaatttagtaaagatgagttggattgt
atttggactgacgataactcagatgagcttgtattaagactccgaattaaaaacattgaa
cctaccaataatattcgcgataatatacattcttctgaagaaaacgactcgatttctccc
tcaattacgtcaggagttgaagagcataaattcctggaaaaactaatgacggaatgtctt
tctcaaattacccttagagggataaacaatattaagaaggtttatatgaaagaggaacag
gtttctagatatgatagtgttagtcagaaaatggtgagagacaaccaatgggtgcttgac
acagatgggtgtaatcttgaagcagtgctttgccacacagcaatagatagtacaagaaca
atctcaaacgatataactgaagtctttagtgtattagggatcgaagccgtaagaagagct
cttcttagagagttgagaacagtaatttcatttgatggaagttatgtaaactataggcac
ttagcactactctgcgataatatgactcaaaagggccacttaatgagtataacaagacat
ggtatcaatagagttgataagggcccgcttcaaaagtgcagttttgaagagacagttgaa
gtcttaatggatgctgctatgtttggagaaactgattatcttaatggcgtaagcgaaaat
gttatgcttgggcagcttgctccatatggaactgcatgctttgacgtcctaattgaccct
gataaacttagggatactgctactcatcttgaaattcatggagaatttgccaaactcggg
aaattctctacgctttctcaaacaacaagatcttattccgacagcggggcatttgaatcg
gattcttttgaatctccaatgtcgcctctttctccaatgtctccgctttaccaatcttat
gaaccaatgtcccctatgatttctggtcaattttctcctgttcaaatgactccaagatcg
ccaatgagtccagtttcaccaggagggatattcagcccagttccatattctcctatgagt
ccatcctcaccacttatggattacacaccaacttctcccatctatgcagcaagtagccca
acatacaatacagaggtttctgaaagggctagaaaaaagtataaggttaacaatacactt
agctcatactcaccatcttcaccattaaattcagacaacaaaataagtaacataagtcca
gatttatcaccaacatcaccgcattattcaccaacatctccacattattcaccaacatct
ccacattattcaccaacatcaccacactattcaccaacatcaccacattattcaccaacg
tcaccacattattcaccaacgtcaccacattattcaccaacgtcaccacattattcacca
acatcaccacattattcaccaacatctccacattattctccaacatcaccacattattcg
ccaacatctccacattattctccaacatcgcctcactactctcctacctcgccacattat
tcaccaacatcaccgcattactctccaacatcaccacactattctccatcatcaccgcat
tattctccaacttcgcctcaatactcacccacatcacccaactacaaccccgcatcgcca
aattattctcccacctcacactactctcctacctcgccaaattacaatcctacctctccg
aattattctccatcttcacccaattatatttcaaataactctggctctcctgggtactcg
ccatcgtcacctcaatatgatcctatagcggttgcttcagtccctagatctccatcgtat
tctgttggaaaaatggtagacgctgaatattcaccgtcttcccctctagacgaaacaaag
aattcataa
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