Cryptosporidium parvum: cgd5_100
Help
Entry
cgd5_100 CDS
T00168
Name
(RefSeq) RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD domain and an HRDc domain
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cpv
Cryptosporidium parvum
Pathway
cpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cgd5_100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpv03019
]
cgd5_100
Messenger RNA biogenesis [BR:
cpv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
cgd5_100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
3373334
NCBI-ProteinID:
XP_625975
ApiDB_CryptoDB:
cgd5_100
UniProt:
Q5CS61
LinkDB
All DBs
Position
5:<31436..>34309
Genome browser
AA seq
957 aa
AA seq
DB search
MASRKRERVELKKDNISLGEGEDDLEITQVNNSGAEDIVCSNHEVEKCISESVLVSYNCE
NCVRMRNRTMNILNDSEKSLMIQTLWSNLINNFTFKFIPRLLSKPYSLEETNEKFKKIVE
RLIFMNVEKETNRINLTKDKLLEEDHHNKTYILPCLYPGIYSTNIPCLAPVGSDHTGLVL
IDELNKLLHSKELVLCQKFIVRSHFQIGNIYQRELKSLNWGVNGTVYRTGEDEDTPNSNN
EEIPNAHFNIKYSSPELYLPLSNTPLTFIKEPGDLRRMIDDILNLMESHYSQSSMNEESS
PFLLAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFNEIQMLNELTANPKILKVLH
GSDYDIIWLQRDFSVYIVNMFDTGQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWR
ERPLSNELIEYARGDTHYLLYIYDIMKNLLLLHRHKNTEPPVLASDAFMEVKDNLIILKP
DIIERMDFGSYHNFLIEGENGSKLVKVTDLDPSALLTVLHNSRQICLKEYFEKPLDVWSL
CYGVRTKISKSSYKTPIDSAIVTLVSYYLFIWRDSIARLLDVSPSYVLKESMIIKICQKQ
PMNSVEILGLYPNIPVNIKKHSDHILNIVTTVKNFITTKSEDDIFDFNSYISHIYSKIAN
SSNNVSSVNKYMVNKNYKVISTYNSSDSVCLEVTSDSNQSSSIKENEVSSSETHLNDNQP
HDTPAISGARRRSVTIKKNSPGFNDKLADNLFGNSYKSFGNELNSSNSPLNTTVGKISSR
IIQDINNTLNGEVPSDFRNKKLKEIKENSPVPVSNSEISEEINTKKEMTFEEYYLKKTKE
ELLEDECFTPLVSVRDKYNENDDYLYKKQKTSKNKAENDQESQDTSQKSSANIEKEYDNN
APDISDIIKENVDILPASFACKSDLPGFIKNTQKEGVANKSKKYIESMKTKKWHKKR
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtagaaaaagagaaagagtggagttaaagaaggacaacatttctttgggtgaa
ggagaagatgatttagagattacacaggttaataactcaggtgcagaagatattgtttgc
agtaaccatgaagttgaaaaatgtatttctgagagcgtattagtttcatataactgtgag
aattgtgtgagaatgagaaatagaacaatgaacattttgaatgattctgagaagtctcta
atgattcagacattgtggtcaaatttaattaataattttacttttaagttcattccaaga
cttctttccaaaccatatagtttggaagaaacaaatgaaaaatttaaaaaaatagttgaa
agacttatattcatgaatgttgaaaaggagactaataggataaatctgacaaaggataaa
ttacttgaagaagatcatcacaataagacttatattttgccatgtctatatccaggaata
tactcgacaaatattccatgtttggctccagttggttctgatcatactggactagttctg
attgatgaattaaataaacttttacattctaaagagctggttttatgccaaaagtttatt
gttagaagtcactttcagattggtaatatatatcaacgcgagctaaagtctttaaattgg
ggagttaatgggacagtatatcggacaggagaagatgaagatactcccaattctaataat
gaagaaataccaaatgctcatttcaatataaaatattcaagcccagaactctatttacct
ttatctaatactcctttgacattcattaaagaacctggagatttaagaagaatgatagat
gatattctgaatttaatggaatctcactatagtcaaagtagtatgaatgaagaaagtagt
ccttttctccttgctattgatgttgaacaccattcaaatcaaagctataaaggatttgtt
tcattaatacaactaagcacaagaacacatgattacatcattgatccttttaatttgttc
aatgaaattcaaatgcttaatgaactaacagctaatccaaagattctgaaagttctccat
ggatcagattacgatataatctggttgcaaagggatttttctgtctatattgtaaatatg
tttgatactggacaagcagctagaattcttaatacccctggaggatattctcttaagaat
ttattgagtatatattgctccctagatattgataaacgatttcaattagcagactggaga
gaaagacctttaagtaatgaattaatagagtatgctagaggcgatacacactatttactt
tatatttatgatattatgaagaaccttttgttattacataggcataaaaatactgaacct
cctgtactggcttcagatgcttttatggaggtaaaagacaacttaataatacttaagcca
gacatcatagaaaggatggactttggtagttaccataattttttaattgaaggagaaaat
ggaagtaaattggtaaaagtcacagatttggacccatcagcactgttaactgtacttcac
aatagtcgccagatctgtctaaaagaatactttgaaaagccattggatgtttggagtctt
tgctatggagttagaactaagatatccaagtcaagttacaaaactcccatagatagtgca
atcgttacgttagtaagctattatttgtttatttggagggattctatcgcaagacttttg
gatgttagtcctagttatgttctcaaagagtcaatgataataaaaatatgtcaaaaacag
ccaatgaatagtgtagaaattcttggattatatccaaatatcccagtaaatattaaaaag
cattctgatcatattttaaatattgttacaacagtaaaaaatttcattacaacaaaatct
gaagatgatatctttgactttaattcctatatttctcacatttactctaaaattgcaaat
tccagcaataatgtcagcagtgtgaataaatatatggtaaacaaaaattacaaagttatt
tctacgtataacagtagtgattctgtttgtttagaagtaacaagtgattctaatcaaagc
tcttcaataaaagaaaatgaagtctcaagttcagaaacacatttgaatgacaatcaacca
catgatactcccgctattagtggagccaggaggaggtctgttacaattaaaaagaactct
cctggctttaatgacaaacttgcagataatctttttggtaactcttataaaagctttgga
aatgagttaaattcaagtaattcacccctaaacactactgttggtaaaatttcaagcaga
atcattcaggatattaataatactttaaatggagaggtaccaagcgactttagaaataaa
aaattaaaagaaattaaagaaaatagtccagtaccagtaagcaattcagaaatttctgaa
gaaataaatactaaaaaagaaatgacattcgaggagtactatttaaaaaaaactaaagaa
gaactactcgaagatgaatgctttactcctttagtttcagtcagggataaatataatgaa
aacgacgactatctttacaaaaaacagaaaacttcaaaaaataaagcagaaaatgaccag
gaatctcaagatactagtcaaaaatcttcagccaatattgaaaaagagtatgataacaat
gctcctgatatttctgatataataaaagaaaatgttgacattttgcccgccagtttcgca
tgcaaatctgatttacctggtttcattaaaaatactcagaaagagggggttgcaaataaa
tcgaaaaaatatattgagtcaatgaagactaaaaagtggcacaagaagaggtag
DBGET
integrated database retrieval system
