KEGG   Cryptosporidium parvum: cgd7_1070
Entry
cgd7_1070         CDS       T00168                                 
Name
(RefSeq) snRNP core protein
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
cpv  Cryptosporidium parvum
Pathway
cpv03018  RNA degradation
cpv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    cgd7_1070
  09123 Folding, sorting and degradation
   03018 RNA degradation
    cgd7_1070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpv03019]
    cgd7_1070
   03041 Spliceosome [BR:cpv03041]
    cgd7_1070
Messenger RNA biogenesis [BR:cpv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     cgd7_1070
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     cgd7_1070
Spliceosome [BR:cpv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    cgd7_1070
 Complex C
  U2 snRNP components
    cgd7_1070
SSDB
Motif
Pfam: LSM Hfq SM-ATX
Other DBs
NCBI-GeneID: 3371777
NCBI-ProteinID: XP_628293
ApiDB_CryptoDB: cgd7_1070
UniProt: Q5CYT7
LinkDB
Position
7:269870..270193
AA seq 107 aa
NFSIKLFFNFLQTLIEKQVVVTVELKNDLQITGTLHSIDQYLNIKLNNTTVNQNESFIHL
GSLKNCFIRGSVVRYIFFPPSEVDIELLQKACRKELRSMNDCKEKQK
NT seq 324 nt   +upstreamnt  +downstreamnt
aatttttctataaagctattttttaattttctacaaactctaatagagaaacaggtagtg
gtaacagtggagctcaagaatgatttacaaataacaggaactttacatagtattgatcaa
tatttgaatataaagctaaataatacaacagtaaatcaaaacgagagttttattcatttg
ggatctctcaagaattgctttattagaggaagtgttgtaagatatatcttctttcctcct
tctgaagtggatattgaacttcttcagaaagcttgtagaaaggagttaagaagtatgaat
gattgcaaagaaaagcaaaagtga

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