Cryptosporidium parvum: cgd8_2250
Help
Entry
cgd8_2250 CDS
T00168
Name
(RefSeq) Rat1 Kar1/Rat1 like 5'-3' exonuclease
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cpv
Cryptosporidium parvum
Pathway
cpv03008
Ribosome biogenesis in eukaryotes
cpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
cgd8_2250
09123 Folding, sorting and degradation
03018 RNA degradation
cgd8_2250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpv03021
]
cgd8_2250
03019 Messenger RNA biogenesis [BR:
cpv03019
]
cgd8_2250
03009 Ribosome biogenesis [BR:
cpv03009
]
cgd8_2250
03016 Transfer RNA biogenesis [BR:
cpv03016
]
cgd8_2250
Transcription machinery [BR:
cpv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
cgd8_2250
Messenger RNA biogenesis [BR:
cpv03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
cgd8_2250
Ribosome biogenesis [BR:
cpv03009
]
Eukaryotic type
Pre-60S particles
RNases
cgd8_2250
Transfer RNA biogenesis [BR:
cpv03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
cgd8_2250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
3374485
NCBI-ProteinID:
XP_627128
ApiDB_CryptoDB:
cgd8_2250
UniProt:
Q5CVZ1
LinkDB
All DBs
Position
8:597200..601252
Genome browser
AA seq
1350 aa
AA seq
DB search
MGVPTFYRWLCNRYPLIVKELKDAVDEETCLNDLDLTEPNINGEFDCLYLDMNGIIHPCC
NPSGGDKPKDEAEMFTRVCDYIDRLYAMVKPRRLIYMAIDGVAPRAKMNQQRSRRYKTAL
EMDYNRRAYEIAQEEFSKIGYKCPEYVEKWDSNVITPGTPFMERLTMCLHAYIRRKFETD
ESWRSISVIFSDSNIPGEGEHKILEFIRNQRSNEDYNPNTRHVLYGSDADLIMLGLSTHE
SYFYIIREAVRDFKVESPSSISILYNTWIEKINNNHLGSSFGDNGTNNSSDIILNGIFQN
GPNFGKKLRIYSWWSDIEIVDLSMLREYLNFDFGEIRDQIGYINNNIGENLVNEYGMKNN
SDFQYDFERCIDDFIFLCFFIGNDFLPNLPVFSIYKGSLDQILGIYIRVLPRIGDYLTLE
GNIIPNSIIQFFKYLRDLEYEIIIQESRFSQRTSTFANDRGRRMIKNNNIDNTGQNNISL
EEGTQESMLSSTLVSNTSKLVNSQGGERPTISVSEIELLFGDDKVLSGVESTTNITTDLN
TNINTNTNTNNESGITLETQEKVQEEEDCDSSGKNQRKKRRFDSMESYFQEHLSKLVKYL
SEVEDYNEENILMDNNQSSNLNNSDNLDNNNDNSNIDQGRVLLSIDNPINILKYRLSYYN
RKFNAQINYIDEKVQHEEIEICEKKEYNEAKSKLNEISDQVCIHYLRGLSWVLGYYYHGV
PSWDWYYPYHYAPYVMDIVELLSDVKNENKIKESLIGEFNLGKPFTQFEQLMSVLPPKSG
KICLPKEFYNMMIDKDNPLSEFYPSKFKQDPNGNKQRWKWVALLPFIDQKVLLETVIPLE
NEMDVLSKYRNKLGCDILYSFKFSPLKNIIIENQQEQEHSESNSNNQFNTIKITDMPIFG
YFQNYYNNSDLKIHHDQKNEDLINFEQVTVPIIETCENIQQGKEIITRMLNDDKNKRNWK
SILESSFNYKINHPNYIIGYFKLEKMEKNVIWKDPTNENFQMFKVGFGSKMLPNTRPFSN
SISEFDLNNQERKYKGFKANQSQKILFKLFNYWNLNIDFKQSSFFQGIQSNHNNNNNNNN
NKRFMDQLNDHHYSSTSLSSHHSNYYHQQGYDTNNYHNNIFSSSSKRAFVVPPTTTSASI
SAHPYSRFNTPNHPSGNHLYDHEYFSRNKDRIFGSQNGGGRDGFGGVGRDGFGGVGRDGF
GGVGRDGFGGGGRGGKGGFGGGRGGFGGGRGGFGGGRGGFGGDGLTGGRGRTGDYRGDPG
HHQYYNSNDGNNNSNNHNHYNSNRYLPPPSLPYSSTSRDGERSQNHNIQSGMRVTPRPNC
YDYYNRDPYNRDPKSHHFSQHPKNEEKKNI
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccaacattttatagatggttatgtaataggtatccattgatagtgaaggag
ttgaaggatgctgttgatgaggagacgtgcttaaatgacttagacttaactgagccaaat
attaatggagaatttgattgtttatatttagatatgaatggtataatacatccatgttgt
aatccaagcggaggagataaaccaaaagatgaggctgagatgttcacgagagtatgtgat
tatattgatagattatatgcaatggtgaaaccaagaaggttgatttatatggcaatagat
ggcgtagcaccaagagcaaaaatgaatcaacaaagaagtagaaggtataaaacagcttta
gaaatggattataataggagagcttatgaaatagctcaggaagaattttctaagattggt
tataaatgtcctgaatatgttgagaaatgggatagtaatgtaattacaccaggaactcca
tttatggaaagattaacaatgtgtttacatgcatatataaggagaaagtttgaaacagat
gaatcatggcgatcaatttcagtaatattttctgattcaaatataccaggagaaggagaa
cataagatattggaatttattaggaatcaaagaagtaatgaagattataatcctaataca
agacatgttttatatggatcagatgctgatttaattatgcttggtttatctactcatgag
tcttatttttatattattagagaagcagtgagagattttaaggttgaatctccgtcatca
atttcaatattatataatacttggattgaaaagattaacaataatcatttaggttcatca
tttggagataatggaacaaataattctagtgatattattcttaatgggatttttcaaaat
ggtccaaattttggaaagaaacttcgaatttattcttggtggtcagatattgagattgtt
gatctttcaatgttaagagagtatttaaattttgattttggtgaaataagagaccaaatt
gggtatataaataataatattggagaaaatttagtaaatgaatatggaatgaaaaataat
tcagattttcaatatgattttgaaagatgtattgatgattttatatttctatgtttcttt
attggaaatgattttcttccaaatcttccagtatttagtatttataagggatctttggat
cagattcttggaatttacattagagtattacctagaattggtgattatttgactttagaa
ggaaacattattcctaattccataattcaattcttcaaatatctccgagatttggagtat
gaaattattattcaagaatccaggtttagtcaaagaacgagtacatttgcaaatgataga
ggaagaagaatgattaagaataataatattgataatactggtcagaataatattagttta
gaggaaggaactcaagaatctatgctttcttctactttagtttcaaatacttctaagtta
gtaaactctcaaggaggagagaggcctactatttcagtttcggagatagaattacttttt
ggtgatgataaagtactttctggagtagaatcaactactaatattacaactgatttaaac
acaaatatcaataccaataccaataccaataatgaatctggtatcactcttgaaactcaa
gaaaaagtacaagaagaagaagattgcgattcctctggtaagaatcaaaggaagaaaagg
cgatttgatagtatggagtcatattttcaagaacacttatcaaagttggtcaagtattta
tcagaagttgaagattataatgaagaaaatatattaatggacaataatcaatcttctaat
ttgaataatagtgataatcttgataataacaatgataatagtaatattgatcaaggaaga
gtcttattaagcattgacaatccaattaatatattaaaatacagattaagttattataat
agaaagttcaatgctcaaattaattatattgatgaaaaagtacaacatgaagaaatagaa
atatgtgaaaaaaaagaatacaatgaagctaaatctaagttaaatgaaatctctgatcaa
gtatgtatacattatttaagaggattatcatgggtacttggttattattatcatggagta
cctagttgggattggtattatccttaccattatgctccttatgtaatggatattgtggaa
ttattaagtgatgttaaaaatgaaaacaaaattaaagagtctctaattggtgaatttaat
cttggaaaaccatttactcaatttgaacaattaatgtcagtattacctccaaaatctgga
aaaatatgtctacctaaagagttttataatatgatgatcgataaagataatcctttaagt
gaattttatccaagtaaatttaaacaagatcctaatggtaataaacaaagatggaaatgg
gttgctttacttccatttattgatcagaaagtattattagaaactgtgatacctttagaa
aatgaaatggatgttttatctaaatatagaaataaacttggatgtgatattttatattca
ttcaaattctctccattaaagaatattattattgaaaatcaacaagaacaagaacattct
gaatctaattctaataatcaatttaatactataaaaataacagatatgcctatttttgga
tatttccaaaattattataataattcagatctaaaaattcatcatgatcaaaaaaatgaa
gatcttattaattttgaacaggtaacggtaccaattattgaaacatgtgaaaatatacaa
caaggtaaagaaattattacaagaatgttgaatgatgataaaaataaaagaaattggaaa
agtatattagaaagttcatttaattataaaataaatcatccaaattatattattggatat
tttaaacttgaaaaaatggaaaaaaatgttatatggaaagatccaactaatgagaatttt
caaatgtttaaagttggttttggttcaaaaatgttgccaaatacacgtccattttctaat
tctatttcagaatttgatttaaataatcaagaaagaaagtataaaggatttaaagcaaat
caaagtcagaagattcttttcaaattatttaattattggaatcttaatattgattttaaa
caatcatcattctttcaaggaatccaaagtaaccacaataataataataataataataat
aataaaagatttatggatcaactcaatgatcatcattattcttctacttctttatcttcc
caccactctaattattaccaccagcaaggatatgatactaataattatcataataacatc
ttttcatcttcatcaaagcgagcttttgttgttcctccaactacaacttcagcttcaatt
tctgctcacccatacagccgtttcaatactccaaatcacccatcaggaaatcatctatat
gatcatgagtacttttcgaggaacaaggacagaatctttggcagccaaaatggaggaggg
agggatggatttggaggagtaggaagggatggatttggaggagtaggaagggatggattc
ggaggagtaggaagggatggattcggaggaggagggagaggaggaaaaggtggatttgga
ggaggaagaggtggatttggaggaggaagaggcggatttggaggagggagaggtggattc
ggaggagatggacttacaggaggaagggggaggacaggagactacagaggagatccaggc
caccatcaatattataatagtaatgacggcaataacaacagtaacaaccacaatcattat
aattcaaacagatatctcccccctccttcacttccatactcatcaacatcacgtgatggt
gaacgctcacaaaatcataatatacaatccggtatgagagtcacaccacgccctaattgt
tatgactattataatcgggatccttataatcgggatcctaaatctcaccatttttcccaa
catccaaaaaatgaagaaaaaaagaacatataa
DBGET
integrated database retrieval system
