Cryptosporidium parvum: cgd8_3900
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Entry
cgd8_3900 CDS
T00168
Name
(RefSeq) Sub2p like superfamily II helicase involved in snRNP biogenesis
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cpv
Cryptosporidium parvum
Pathway
cpv03013
Nucleocytoplasmic transport
cpv03015
mRNA surveillance pathway
cpv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
cgd8_3900
09122 Translation
03013 Nucleocytoplasmic transport
cgd8_3900
03015 mRNA surveillance pathway
cgd8_3900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpv03019
]
cgd8_3900
03041 Spliceosome [BR:
cpv03041
]
cgd8_3900
Enzymes [BR:
cpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
cgd8_3900
Messenger RNA biogenesis [BR:
cpv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
cgd8_3900
Spliceosome [BR:
cpv03041
]
Complex C
Other components
EJC/TREX
cgd8_3900
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
cgd8_3900
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
3374611
NCBI-ProteinID:
XP_627282
ApiDB_CryptoDB:
cgd8_3900
UniProt:
Q5CVI7
LinkDB
All DBs
Position
8:<974528..>975820
Genome browser
AA seq
430 aa
AA seq
DB search
VVRMSVQNTEELVDYEEEETTTRIEEESRADEGSKVGRGNYVAIHASGFRDFFLKPELIR
AIGDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLNPDEESKNVEC
ICIGHTRELAFQVKNEFDRFSKYLKNVKPQVVYGGIPIQKDIDMLSNSTPNILIGTPGRI
IALIRQKKLVTEGIAHFVLDECDKCLESLDMRKDVQEIFMSTPRKKQVMMFSATMTKEIR
DVCRKFMQNPVEIFVDDETKLTLHGLLQYYVKLGESEKNRKLNDLLDQLEFNQVIIFVKS
VSRAQALHKLLTECSFPSICIHAALSQQERISRYQQFKNFEKRIMVATDLFGRGIDIERV
NIVINYDMPENTDSYLHRVGRAGRFGTKGLAITMVSSQTDSQVLNDVQSRFEVNIAEMPN
QIDTSSYINQ
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
gttgttagaatgtctgttcaaaatactgaggaattagtagactacgaagaggaggagact
acaacaagaattgaggaggagtctagagcagatgagggatctaaggtgggtagaggtaat
tatgtagctattcacgcctccggatttagggactttttcttaaagcctgaattaattaga
gccataggtgatgcagggtttgagcatccttctgaggtgcagcatgagacaattccccat
gctatcacaggtgttgacattttatgtcaagctaaatcgggaatgggaaagacagcagtt
tttgtattgtcgatcctccagcagttaaatcctgatgaagagagtaagaatgttgaatgc
atttgcattggccatactagggagttagctttccaggtgaagaatgagtttgatagattt
tcaaaatacctcaagaatgtgaagcctcaggtagtttatggaggcatccccatacaaaag
gatatagatatgctttcaaactctacaccaaatattttgattggtacgcctggaagaata
attgcgttaattagacagaagaagttagtgactgagggtattgctcattttgttttggat
gaatgcgataaatgtctagagtctcttgacatgagaaaagacgtccaagagatcttcatg
agtactccaagaaagaagcaggtaatgatgttcagtgctacaatgacaaaggagattaga
gatgtatgcagaaaatttatgcagaatcctgttgagattttcgttgatgacgagacaaaa
ttgacattacatggtttactacaatactatgtaaagttgggtgaatctgaaaaaaataga
aagcttaatgatttactcgatcaattagagtttaaccaggtgattatctttgtcaaaagt
gtctctagagcccaagcacttcataagcttcttacagaatgtagctttccatcaatttgt
attcatgcagctcttagccagcaagaaagaatttcaagataccaacaattcaaaaacttt
gagaaaagaattatggtagcaaccgacttatttggaagaggtattgatattgagagagta
aatattgtaattaattacgatatgccagagaatacagattcttatcttcatagagtcgga
agagccggtagatttggtacaaaaggtcttgcaattaccatggtctcttctcaaactgac
tctcaagtactcaacgacgtacagagtagattcgaagtcaacattgctgaaatgccaaac
cagattgatacttcctcatatatcaatcaatga
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