Coccidioides posadasii: 9692631
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Entry
9692631 CDS
T01332
Symbol
SYF1, D8B26_007605
Name
(RefSeq) pre-mRNA-splicing factor syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cpw
Coccidioides posadasii
Pathway
cpw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9692631 (SYF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpw03019
]
9692631 (SYF1)
03041 Spliceosome [BR:
cpw03041
]
9692631 (SYF1)
Messenger RNA biogenesis [BR:
cpw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
9692631 (SYF1)
Spliceosome [BR:
cpw03041
]
Complex B
Other components
Prp19-related factors
9692631 (SYF1)
Complex C
9692631 (SYF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
Mad3_BUB1_I
ARM_TT21
MIT
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
9692631
NCBI-ProteinID:
XP_003067160
UniProt:
C5PD54
LinkDB
All DBs
Position
4:complement(join(2348137..2348422,2348489..2350500,2350558..2350611,2350667..2350783,2350843..2350932))
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AA seq
852 aa
AA seq
DB search
MPGTVLNARASQQRAEVDKMDSARSDLYLISSEDAVYEQDILRDPASIKPWLSYIEFKQQ
NGTAYEQAFVMERACKHLPRSYKLWKMYLEFRIKHLRGRNPAVHRIEYLKVNALFERAVI
LLNKMPRIWEMYLAFLLEQPLVTQTRRTFDRALRALPITQHNRIWKLYKSFAVSASGDTA
VKIWDRYMQIHPENAEEYIDILVEMKQYTDAVRRYIEVLDDPRFQSKKGKSHFELWTEMV
ELLVNHAKEIETGPQSGIDVAAIIHSGIDRFPDQRGKLWVGLATYWITRGNFEKARDVFE
EGVTTVMTVRDFTMIFDSYVEFEESIISALMETAAVRLDEGKADENADFDLDLRMMRFEQ
LMDRRPFLVNDVLLRQNPNNVVEWNKRVALWGDNKEEVVRTYGAAIAAINPKKAHGKFHE
LWVNFAKFYEKGGDLATARIIFDKAVKVPFKSVEELAEIWCEWAEMELRNENFDQAVNIM
AKATLSSKRSTVDYFDDKLTPQQRIHKSWKVWSFYVDLVESVGNLDETKNVYERIFELRI
ATPQTVVNYANLLEENKYFEEAFKIYERGLDLFSYPVAFELWNLYLTKAVDRKISIERLR
DLFEQAVDGCPPKYAKTLYLMYGNLEEERGLARHAMRIYERATRAVSDKDRFEMFNFYIT
KSASNFGLTSTRPIYERAIAALPDNEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDP
RTNAGFWQKWEAFEVQHGNEDTFKEMLRIKRSVQVQYNTDVNFIASQAIARSKQLAKEAA
DVAAAEEPEERAHAMAALERHAKAPAGFVPASTGPEGGNRPVTERDQAPATNPDAIDLDE
DMAAEEPQEASS
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgccggggaccgttttgaacgccagagcttcgcagcagcgcgcagaagtcgacaagatg
gattcagctcggtctgatctctatttgatttccagcgaggatgcggtgtatgagcaggat
atcctgcgcgatccggccagcattaaaccctggctctcatatatcgagttcaagcagcag
aatggaacagcgtacgaacaggcgtttgtcatggagcgggcttgcaagcatctcccgagg
tcatacaaactgtggaagatgtatctcgagttccgaatcaaacatctccgggggcgaaac
ccggcggttcatcgaatagagtatctcaaggtcaatgctctctttgaacgggccgtcatt
cttctcaataaaatgccacggatttgggaaatgtacctcgcattcttgctagagcagccg
ttggttacgcaaactcggcgaacgtttgaccgtgcccttcgcgctttaccaatcacccag
cataatcgaatatggaaactgtacaagtccttcgcggtctctgcttccggtgacacggcc
gtcaaaatatgggatcgttacatgcaaatacaccccgagaatgctgaggaatacatcgat
atcttggtggagatgaaacaatatactgatgccgtgagacgatatattgaggtcttagac
gatccaagatttcagtccaaaaagggcaaaagccatttcgaactctggacagaaatggta
gagctccttgtcaatcacgccaaggaaatcgaaacaggcccgcagtcgggaattgacgtg
gcggcaatcattcacagcggcattgacagatttcccgaccagagaggtaaactctgggtt
ggtctagcgacatattggatcactcgcggcaatttcgaaaaagcccgggatgttttcgaa
gagggtgtcacaaccgttatgacggtccgtgactttacaatgatatttgattcctacgtt
gagtttgaagaatctatcattagcgccttgatggaaacagccgccgttcgtttggatgaa
gggaaggccgatgagaatgctgacttcgaccttgaccttcgtatgatgagattcgagcaa
ctgatggatcgccgacccttcttggttaacgatgtccttttgagacaaaaccccaacaac
gtcgtagagtggaacaaacgagtggctttgtggggcgataacaaagaagaagttgtccgc
acttatggggctgctattgctgcaatcaaccccaaaaaggctcacggaaaattccacgaa
ctctgggttaatttcgctaagttttacgagaaaggtggagatctcgctaccgcaaggata
attttcgacaaagcagtcaaggtgcctttcaagtccgtcgaagagttagctgagatctgg
tgcgagtgggcagaaatggagctgcggaacgagaatttcgatcaagctgtgaacattatg
gccaaagctactctctcatctaagcgttctaccgtcgactactttgacgataagctgact
cctcaacaacgcatacataagagctggaaggtgtggagtttctatgttgatttggtggag
agtgttgggaaccttgatgaaacgaagaatgtatatgaaaggatcttcgagcttcggatt
gcaactccccagacagtcgtcaattatgccaatctcctggaggagaataagtattttgaa
gaagccttcaagatctatgagcgaggtcttgatctcttcagctatccagttgctttcgag
ctgtggaacctctatttgaccaaagccgttgaccggaaaatcagcattgaacgattacgg
gatctgtttgaacaagccgtggatggatgcccacctaagtacgctaagactctttactta
atgtacggcaatctggaggaagagcgaggcctcgcacgtcatgcaatgcggatctacgag
cgcgcgactcgcgcagtatcggataaggacagatttgaaatgttcaacttctacatcacc
aaatcagcatccaattttggcttaacgtcgactaggcctatttatgaacgcgccattgcc
gcgttacccgataatgaagcgaaggaaatgtgtctgaaatttgcagaaatggagcgcagg
ttgggtgagatcgatcgagctcgcgcaatatatgggcatgcctctcaattttgtgatcct
cggaccaacgccggtttctggcaaaaatgggaggcatttgaagttcagcatggcaacgaa
gacacattcaaagaaatgctacgtattaaacgaagtgtccaagttcagtacaatacggat
gtcaacttcattgcatcccaggcgatcgcccggagcaagcaacttgcaaaagaagcagct
gacgtcgcagccgctgaagaacccgaggagcgtgcgcacgccatggcagctttagagcgc
cacgccaaagctccagccggctttgttcccgcaagcactggccctgaaggaggtaaccgc
ccagttacagaaagagatcaagcaccagcaaccaatcccgatgctattgatctcgacgaa
gatatggctgcggaggaacctcaagaagccagttcatga
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