Coccidioides posadasii: 9692921
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Entry
9692921 CDS
T01332
Symbol
DED1, D8B26_007931
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cpw
Coccidioides posadasii
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpw03019
]
9692921 (DED1)
03041 Spliceosome [BR:
cpw03041
]
9692921 (DED1)
03036 Chromosome and associated proteins [BR:
cpw03036
]
9692921 (DED1)
Enzymes [BR:
cpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9692921 (DED1)
Messenger RNA biogenesis [BR:
cpw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
9692921 (DED1)
mRNA cycle factors
Common to processing body (P body) and stress granule
9692921 (DED1)
Spliceosome [BR:
cpw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
9692921 (DED1)
Chromosome and associated proteins [BR:
cpw03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
9692921 (DED1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9692921
NCBI-ProteinID:
XP_003067450
UniProt:
C5PDZ4
LinkDB
All DBs
Position
4:join(3256628..3256818,3256883..3258698)
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AA seq
668 aa
AA seq
DB search
MADSLKMAGLSLEDSQHAPSHATGRAPYIPPHLRGQQRAGPTMPVDGAAPQGRPPMNPGS
WGPNKSGAPPNNWAPRGANNMNGAPAWGAAGGGGGARFDPNAYGHPGHRGGQSHGGAGSG
AARGSGDGQWRDGKHIPGPPNARLERELFGVPNDPSKQHTGINFANYDDIPVEASGHDVP
EPVTAFTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLF
PILSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWV
RPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDM
GFEPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENI
TQKVEYVEDADKRSVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRT
QRERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAG
NTGLSTAFFNRGNRGVVRDLIELLKEAHQEVPAFLENIAREGSGYGGRGGGRGGGRGRGA
NATRDMRRMGGGGPPMSGTPSYSGGYGGGANNYGGSYSSAPSYGGYGGGYGGGGYGNPSG
PTGPSSWW
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggctgattccttgaaaatggctggcctctcgctcgaggactcccaacacgcccctagc
catgccaccggtcgtgccccgtacattcctccccacctccgtggtcagcaacgcgccggc
cctaccatgcctgtcgatggtgctgctccacaaggtcgtcctccaatgaaccctggctct
tggggtcccaataaaagtggtgctcctcccaacaactgggctcctcgaggagcaaataat
atgaacggtgcccctgcctggggtgctgctggtggtggcggtggtgctcgtttcgatcca
aatgcctatggccaccctggtcatcgcggcggtcagagccacggtggtgccggtagcggt
gctgcccgtggatccggtgatggtcagtggcgcgatggaaagcatatccccggtccacca
aatgcccgtcttgaacgtgaactcttcggcgtccccaacgacccatccaagcagcatacc
ggcatcaacttcgccaactacgatgacattcctgtcgaggcctcaggtcacgatgttcca
gagccagtgactgccttcacaaacccacccctggatgaccatttgatatccaacatcaaa
cttgccacctacaagacaccgaccccagtccagaagtattccatcccaattgtcatgggt
ggtcgtgacctcatggcctgtgctcagaccggttccggaaaaactggcggtttcctcttc
ccaattctctctcaagcttttaaaaacggcccttccgcggtcccaacacaaaacgctaac
caattcagctatggccgtcagcgaaaagcctacccgacctcgttgatcttggcccctacc
cgtgaattggtgtctcagatctacgatgaagcccgcaagttcgcttaccgttcctgggtt
cgcccatgcgtcgtctacggcggtgcggatatcggttctcagctccgccagattgaacgt
ggctgtgaccttcttgtcgctactcccggccgtcttgtcgatctgatcgaacgtggacgt
atctctctctgcaatatcaagtacctcgtccttgatgaggccgatcgcatgttggacatg
ggtttcgagccccagattcgccgcatcgtcgagggagaggatatgccacctgtcaacgga
cgtcagaccctcatgttttcggccacattccctcgtgacatccagatgctcgcccgcgac
ttcttgaaggactatgtgttcttgtctgtcggtcgtgtcggatccacttcggagaacatc
acccaaaaggtcgaatacgtcgaagacgccgacaagcgctccgttctgctcgatatcctc
cacacccatggaactggactcactctcattttcgtcgagaccaagcgcatggctgattct
ctatctgagttccttatcaaccagaatttccctgcaactgctatccacggtgaccgcact
caacgtgagcgtgagcgggctcttgaatacttccgcaacggccgctgccctatcctcgtt
gccactgctgttgctgctcgtggtctcgatatccctaatgttactcacgtcgtcaactac
gatctccccaccgacatcgatgactatgtccatcgtatcggccgtactggtcgtgctggt
aacaccggtctgtccacagctttcttcaaccgtggcaaccgcggtgtcgtccgtgacttg
atcgaattactcaaagaagctcaccaggaagtcccggccttcttggaaaatattgctcgt
gagggcagcggatacggcggccgtggcggcggtcgtggtggtggaagaggccgtggtgcc
aatgccactcgtgatatgcgtcgcatgggcggtggtggtcctccaatgagtggtactcca
tcctacagcggtggttatggtggtggcgccaacaactatggtggaagctatagcagtgct
ccatcttacggcggatacggcggtggctacggtggaggcggctacggcaacccatctggt
cccaccgggccatcttcttggtggtaa
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