Coccidioides posadasii: 9694275
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Entry
9694275 CDS
T01332
Symbol
RAT1, D8B26_002956
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cpw
Coccidioides posadasii
Pathway
cpw03008
Ribosome biogenesis in eukaryotes
cpw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
9694275 (RAT1)
09123 Folding, sorting and degradation
03018 RNA degradation
9694275 (RAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpw03021
]
9694275 (RAT1)
03019 Messenger RNA biogenesis [BR:
cpw03019
]
9694275 (RAT1)
03009 Ribosome biogenesis [BR:
cpw03009
]
9694275 (RAT1)
03016 Transfer RNA biogenesis [BR:
cpw03016
]
9694275 (RAT1)
Transcription machinery [BR:
cpw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
9694275 (RAT1)
Messenger RNA biogenesis [BR:
cpw03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
9694275 (RAT1)
Ribosome biogenesis [BR:
cpw03009
]
Eukaryotic type
Pre-60S particles
RNases
9694275 (RAT1)
Transfer RNA biogenesis [BR:
cpw03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
9694275 (RAT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
9694275
NCBI-ProteinID:
XP_003068792
UniProt:
C5PA85
LinkDB
All DBs
Position
2:complement(join(1339962..1340556,1340610..1342354,1342404..1342529,1342579..1342856,1343032..1343338))
Genome browser
AA seq
1016 aa
AA seq
DB search
MGVPALFRWLSTKYPKIISAVVEELPQEIDGEEFPVDTTKPNPNGEEMDNLYLDMNGIVH
PCTHPEGKPAPANEGEMMLEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRFR
SAQEAKEADEKKAEFAKLLRQQNRGKGDMEIAEEVVQKTWDSNVITPGTPFMDILSAALR
YWVAYKLNTDPAWEKVKIIISDATVPGEGEHKIMEFIRSQRSCPEHDANTRHVIYGLDAD
LIMLGLATHEPHFRVLREDVFFQESKARTCHLCGQQGHVAEACTGKAKEKNGEFDEKQRG
TPLKPFIWLHVSVLREYLAAEMYVPNQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLEI
RENGIDTLIAIWRDNIPLMGGYLTQDGNVDLKRAQLILQGLAKQEDAIFRRRRQTEERRN
TNAKRRKEQERQREEENARKRPRHSLENETAGPSPRRGKDMDGIAPANMPLFIPSKGELP
RAERELTHAMVVNRGAIYKANMANKSAAAALKSQLISGASEMSVEVSTSTSANDVSPSAL
GKRKADALETDNTTEQEDSERPPQEQDELPADSVRLWEQGYADRYYEQKFHVDPKDIEFR
HKVARAYVEGLCWVLLYYFQGCPSWTWYYPYHYAPFAADFVDLEHMDIQFHKGAPFRPFE
QLMGVLPAASNHAIPEIFRDLMSNPESEIIDFYPEEFPIDLNGKKFAWQGVALLPFIDES
RLLEAMAKRYPRLSEEEKARNEMGRDILFISDRHPLYKELVANFYSKKQSVPKFKLNMRV
SEGLGGKVERDEAYIPHSSLVASIDGIELPALDEDRSISVLYDIPKSMYTHKSMLLPGVK
FNPPVLDKTDIEVTKAKAQRSGRSFGGAPLHSGNGRGRGRISYASDRPNPFAAHLDPSFK
PPPHMNAPPGRGGPHQFDRHRSQNPPSQQSRGRGYGGYGGYGGSYGQRDSYHPPAPRGRD
SYQDRQDRQYQHQDRPYPPSGAGGGSGSNYYRGRGGGQQRSSQSGYYGRNDGYGRY
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccagcacttttccggtggctctccaccaagtacccaaaaatcatttcggct
gtcgtggaggagcttcctcaggaaatcgatggcgaggagtttccggtggataccaccaag
cctaacccaaatggcgaagaaatggacaatctctatctcgatatgaacggcatcgtacac
ccttgtacccaccccgagggtaaaccagcaccagcaaacgaaggcgagatgatgcttgag
atcttcaagtataccgacagagttgtgaacatggtcaggccgagaaaacttttgatgatc
gctgttgatggtgtggctcctcgcgcaaaaatgaatcagcagcgctctcgccgtttccgc
tctgcgcaagaagcaaaggaagctgatgaaaagaaagctgaatttgcaaaattactcagg
caacaaaatagaggaaagggtgacatggaaattgctgaggaggtagttcaaaagacgtgg
gatagcaacgtcattactcctggcacgccgttcatggacattctttcggctgccctacgt
tactgggttgcatacaaactgaacaccgaccccgcttgggaaaaggtcaaaattattatt
tccgacgccaccgtccctggggagggtgagcataaaattatggaatttattcgatcccag
agatcgtgtcctgaacatgacgcgaatacacgccatgttatatatggtttggacgctgat
ttaatcatgcttgggctcgcaacccatgaaccccactttcgagtgctgcgtgaggatgtc
ttctttcaagaatcaaaagctcggacctgtcatctctgcggccaacaagggcacgttgct
gaagcgtgtacaggcaaggcaaaggaaaagaatggagagtttgatgaaaagcaaagaggt
acccctctcaagccgtttatatggcttcatgtgtctgttcttcgggagtatttagctgcc
gaaatgtatgttcctaaccaaccattcccgtttgaccttgaaagagctcttgacgactgg
gttttcatgtgcttcttcgttggaaacgatttcttacctcatctaccttcgttggaaata
agggagaatgggattgataccttgatcgcaatatggcgcgacaatattccattgatgggg
ggctacctaacgcaggatgggaatgttgatttaaaacgtgcacagctgattctacaagga
ttagccaagcaagaagacgccatcttccgtcgacggcgacaaactgaagaaaggagaaac
accaatgcgaaaagacgcaaagagcaagaaaggcaaagagaagaggagaacgcccggaag
agaccgaggcactccttggaaaacgaaactgccgggcctagtccacgtcgaggtaaagat
atggatggtattgctcctgcgaatatgcctctttttatcccaagtaagggagagctaccc
agagcagagcgggaattgactcacgctatggtcgtgaaccggggggctatctataaagca
aacatggcgaacaaaagtgctgctgctgctctgaaaagtcaattaatttctggggcttcc
gaaatgagcgtcgaagtttctacgtcaacctcagccaacgatgtgtcgccttcggctcta
ggtaaaagaaaagctgacgcacttgaaacggacaatacgactgagcaagaagattctgaa
aggcctcctcaggagcaagacgaattgcctgcagattcggtacgactttgggagcaaggt
tacgccgaccgatattacgagcaaaagttccatgtggatccaaaagatatcgaattccgc
cataaggtagcacgagcatatgtggaagggctctgctgggtcctcttgtattatttccaa
ggctgtccttcatggacatggtattatccttaccactatgcccctttcgcagccgacttt
gtagacctcgaacatatggacattcaattccataaaggtgcacctttcagaccattcgag
cagttgatgggcgtgttgcccgcggcatccaaccatgcgattccagaaatttttcgagac
ctcatgtctaatcccgagagcgaaatcattgatttctatcctgaagagttccctatcgac
cttaatggaaagaaattcgcatggcaaggagttgctttgcttccatttatcgatgaaagc
cgtctcttggaagcgatggccaagcggtatccccgtttaagcgaagaagagaaagctcgc
aatgagatgggccgggacattctttttatctcagatcggcatcccttgtataaagaattg
gtcgccaatttttactccaaaaagcagagtgttcccaaattcaaactcaacatgcgggtc
agtgaaggacttggaggcaaggtcgagcgtgacgaagcatatatccctcatagctccctg
gtagcatcgatagatggaatagagcttcctgctctggatgaagatcgttccattagtgtc
ctctacgatatacctaaatctatgtatacccacaagtccatgctcctaccaggagtgaag
ttcaatccgccagttctcgacaagacggatatcgaggttacaaaggcgaaggcgcagcga
tccggaagatcattcgggggtgcacctttacattcgggcaacggaaggggtagaggccga
atatcgtatgcgagcgaccgcccaaatccatttgctgctcaccttgatccaagtttcaaa
cccccaccccatatgaacgctccacctggacgcggtggcccacatcagtttgatagacat
cggtctcagaatccaccctcgcaacagtcacgcggaaggggatatggaggctacggaggt
tacggcggctcctatggacagcgggactcatatcacccaccggcacctcgcggcagggat
tcatatcaggacaggcaagacaggcagtatcagcatcaagatcgaccctaccccccgtcg
ggtgcgggtgggggcagtggtagtaattattaccggggccgtggaggtggtcaacagcgt
tcttctcaatctggatactacgggcgtaatgatgggtatggtaggtattga
DBGET
integrated database retrieval system
