Coccidioides posadasii: 9694384
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Entry
9694384 CDS
T01332
Symbol
RPB1, D8B26_002825
Name
(RefSeq) DNA-directed RNA polymerase II subunit rpb1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cpw
Coccidioides posadasii
Pathway
cpw03020
RNA polymerase
cpw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
9694384 (RPB1)
09124 Replication and repair
03420 Nucleotide excision repair
9694384 (RPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpw03021
]
9694384 (RPB1)
03400 DNA repair and recombination proteins [BR:
cpw03400
]
9694384 (RPB1)
Enzymes [BR:
cpw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
9694384 (RPB1)
Transcription machinery [BR:
cpw03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
9694384 (RPB1)
DNA repair and recombination proteins [BR:
cpw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
9694384 (RPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
9694384
NCBI-ProteinID:
XP_065980035
LinkDB
All DBs
Position
2:complement(join(956642..956657,956711..961590,961661..961731,961792..961948,962016..962144))
Genome browser
AA seq
1750 aa
AA seq
DB search
MASVKFPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEARQRPREKGLNDPRL
GTIDRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTS
DQKYLDALRFRDPKRRFDAIWRLSKDVLICEADPPPDDDDPFGKESSKIVKGHGGCGNAQ
PQIRKEGISLVGTWKPNKMRDMMDDTDIQQPEKKQITPQMALNIFRNVSEEDVRILGLSN
DYARPEWMVITVLPVPPPPVRPSVLVGGSSGGQRGEDDLTYKLAEIIRANQNVTRCEQEG
SPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGK
RVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNGPDVHPGAR
YVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSLHKESMMAHRVRV
MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMG
IVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILKPRPRWTGKQMISMVL
PSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVGATGGGIIHTIYNEY
GPEVCMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIEEAVRIRKEEVDSITLSA
TENTLEPLPGMSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTIN
ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA
MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFLYGEDGLDGAF
IENQRVDVIRCSDELFRNRFRIDLMDPENSLSPELLEQATEITGDMEVQRYLDEEWEQLQ
KDRAFLRSVAKEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRL
VVVRGDDVISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAIESRFAKAA
ANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATHIKTPSMT
VYQDPARAMDKESAKQLRSVVEHTNLRSVTEATEIYYDPDIQSTVIEADRDMVESYFIIP
EDVMDDLSRQSKWLLRIILSRPKLLDKGLTVQDVAMKIKESYPQDIAVIFSDNNADEQVI
RIRQIQDPKQDEEDDDDTEYDVTLKKLEAHLLDTLTLRGVAGVERAFINEKSRVRTLEDG
SLYKNSEDPQCKEWVLETSGSALGDVLAIPGVDATRTYSNQFVEILEVFGIEATRTALLR
ELTQVLAFDGSYVNHRHLALLCDVMTSRGFLMAVTRHGINRADTGALMRCSFEETVEILL
DAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVSNNAGLVTMGNVDKGL
ISDGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPAGFTEYQPPGFGGFSPAGA
RSPGGYSPTSPFNTSPTSPGYSPSSGYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPA
YSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA
LGGATGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFAGSPTSPGGPTSPGYSPTS
PTFNPTSPRQ
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgtaaaatttccgttctctaaggcgcctttgcgcaccatcaaagagatccag
tttggtcttctctccccagaagaaatcaaacggatgagtgtggttcacgttgaatatccg
gagacgatggatgaagcaagacagcgccctagagagaaaggtctgaatgatccgcgactt
ggtactatcgatcgaaattggcgttgcgccacctgtgaagagggtatcaacgactgccca
ggtcattttggtcatattgaactgtccacaccggtcttccatattggtttcttgaccaag
atcaagaagctcttggagactgtttgccacaactgtggaaagatcaaggccaacacgagt
gaccagaaatacttagatgctctccgtttccgcgaccccaagaggcgctttgatgcaatc
tggcggctctcgaaagacgtccttatctgcgaagctgatcctcctcccgatgacgacgac
ccattcggcaaagaaagttcaaagatcgtcaagggccacggtggatgcggaaatgcgcaa
ccccagatccgaaaggaaggtatcagccttgttggaacttggaagccgaacaaaatgcga
gacatgatggatgacacggatattcagcagcctgagaagaagcaaatcactccgcagatg
gctctaaatatattcaggaatgtctcggaggaggatgttcgaatcttgggtctaagtaac
gactatgcgaggcccgagtggatggtcatcactgttcttccagtacctccacctccagtt
cgcccaagcgtccttgttggtggaagctctggagggcagcgcggcgaagacgacctaacc
tacaagctggcagaaataattcgcgcgaaccaaaacgtcactcgttgcgagcaagaagga
tctcctgagcatgtcgttcgcgaatttgagtcgctgctacagtaccacgtcgcaacatac
atggataacgatattgctgggcaaccgcaagctatgcaaaaatcaaacaggccagtcaag
gctatacgcggtcgtctaaaggggaaagaaggacgacttcgtcaaaacttaatgggtaaa
cgtgtcgacttttcagcacgtaccgttatcactggtgaccctaatctgtctttggatgaa
gtcggtgttcctgtcagcattgcacagactttgacttatccggaggttgtcaccccctac
aatattaataaactaggccagctagttgataatgggcctgatgttcatcccggagcgcgt
tatgtgattcgcagttccggtgagcgcattgatctacggcaccacaagggcggcggtggg
cggaatttcttgcaatggggctggagagttgagcgccatctcatggacggagatgtcatc
ttgttcaatcgacagccctctctacacaaggaatccatgatggctcaccgcgttcgagtt
atgccgtactcgacgtttcgcttgaacttatccgtcacaactccatataacgccgatttt
gacggtgatgaaatgaacttgcacgtcccacaaagtgaagaagcgcgcgcagagcttaac
cagctatgtttggttccattgaatattgtttcgccgcagcgaaacggtccgttgatgggt
atcgtccaggatacactctgtggtatttacaaaatctgccgtcgtgatgtcttcttgacc
aaagagcaagtcatgaatatgatgctctgggttcctgagtgggatggtgtgctgccgcaa
cctgcaattcttaaaccacgcccgagatggaccggtaaacaaatgattagtatggtgcta
ccatctggtcttaatcttttacgcgtggatcgggataaagtgcccttagccgaaaagttt
tcaccattgaccgataccggcctgctggtacatgggggtgaactcatgtatggaatgttc
tccaagaaaacagtgggcgcgactggcggcggtattatccatacgatctacaacgaatat
ggccctgaggtttgtatgaacttctttaatggcgctcaaaccgtggtaaactattggctt
ctgcacaatggattcagcattggtattggtgatacaattcccgatcttgctaccatccaa
aaaatcgaagaagcggtgcgcattagaaaggaagaagtggattccattactctcagcgcg
acagagaacacactcgaacctcttcctggtatgagcgttcgagagacgtttgaaagcaaa
gtttctcgtgctctcaacaatgctcgtgatgaagcaggtaccgaaaccgaaaagagcttg
aaggatttgaacaatgcagtgcaaatggcacgttctggttcaaagggttcgacgatcaat
atatcccagatgacagccgttgtgggacaacagtccgtggaaggaaaacgtatccctttc
ggcttcaaatatcgcactttgccccatttcacgaaggacgattactcaccagaatcgcgt
ggctttgttgaaaactcttatcttcgtggtttgacacctaccgagtttttcttccacgcc
atggccggtcgtgaaggtcttatcgataccgctgtcaagacagccgagaccggttacatc
cagcgaaagcttgttaaggcattggaagaagttatggtcaagtatgatggtactgtccgc
aattcactaggagatgtcatccaattcctctacggtgaagatggtctcgatggagcattc
attgagaaccaacgtgttgacgttatcagatgctctgatgaactattccgcaatagattc
cgtattgaccttatggatccggaaaactctctgtcccctgaacttctcgagcaagctaca
gagatcaccggtgatatggaagtgcaaagataccttgatgaagaatgggagcaattgcaa
aaggaccgggcctttttgcgttctgttgcaaaagaggatgaagagatgatgcagttgccg
atcaatgttcagcgaattctagagtcggcgaagactacattcaggattcgtgaaggcacg
atcagtgacttacaccctgcagacgtcattcctcaggtacaaggactacttgaccgcttg
gttgtggtccgtggcgacgacgttatatcaaaggaggcacaagaaaacgctacattgctt
ttcaaagctcaacttcgttctcgattagcgttcaagcgtttagttgtggaatactcgttg
aacaagcttgcctttcagcatgtccttggcgccattgaaagtcgattcgcgaaagcagcg
gcaaacccgggcgaaatggtcggtgtcttggcggcgcaatctattggagagccggcaacg
caaatgacattgaatactttccattttgctggtgtttcttcgaagaacgttactctaggt
gttcctcgtctgaaggaaattctcaatgtcgccacccacatcaaaaccccgtcgatgacc
gtgtatcaagatcctgcacgtgcaatggacaaagaatccgccaagcaactccgtagtgtt
gtcgagcatacaaacctaagatccgtgacagaggcaaccgaaatctactatgaccctgac
attcagtcaacagtcattgaagctgatcgcgatatggttgaatcatacttcattatccct
gaggacgttatggatgatttatctcggcaatccaaatggctgctccgtatcattctgagc
cgacctaaactcctggataagggtctcactgtccaagatgtggctatgaaaatcaaggag
tcctaccctcaagatattgcggtcattttcagtgacaacaacgctgacgaacaagtcatt
cggattcgccaaatccaagatcccaagcaggatgaagaggatgatgatgacactgaatat
gatgtaacgctaaagaaacttgaagctcatttacttgatacgcttactctacgtggtgtg
gcgggagttgagcgtgcgttcattaatgagaaatctcgagttcgtacccttgaggatgga
tctctttacaagaacagtgaagatccacaatgtaaggaatgggtccttgaaaccagcgga
tctgccctcggcgatgttctagctatcccaggagtcgatgctacccgaacatattccaac
cagttcgttgagattctcgaggtatttggaatcgaggcaacccgaaccgccctcctgcga
gaattgacccaagtgcttgcgtttgatggttcatatgtcaaccatcgtcacttggctctg
ctctgcgatgtcatgacttcgagaggattcctcatggctgtcacaagacatggtatcaac
cgtgcggacaccggagcattgatgaggtgttctttcgaagaaaccgttgaaatcctgctc
gatgcagcagcattcgccgagcttgatgattgtcgaggtgtttcggagaatcttatcctg
ggtcaaatggcacctgcgggtactggtgaatttgacgtttaccttgaccagaatatgctt
atgggggttgtgtccaacaatgctggattagtcaccatgggtaacgtcgacaaaggtttg
atttccgatggagcggcaacgcagtacgatagtggttcgccaatgcaagagaatatgtat
atcagctcgcctgatccagattctcagttctctccaatcgggcaaaccgggtctgaaact
ccagctggatttactgagtatcaaccgccaggattcggtggcttcagtccggctggagcg
agaagtcctggtggctactcgccgaccagccctttcaataccagcccaacatcccctgga
tattctccttcctcgggttactctccaacctctcctggcatgagcattactagcccacgg
tacatgacatctcccgggttctctccagcgagccctacctttgcgcccacctccccagcg
tattctccgacttcgcccggctatggacaggctcagtcacccacctccccttcatactcg
cctacttctcccgggttctctccaacttctccaagctacagcccaacgtcaccaagcttc
agtccagcttctcccgccttcagccctacttcacctagctacagccctacgagccctgct
cttggcggtgctactggcagacacctttccccaacttcacccacctcgccgaaatacacc
cccacttcacctggttggtcacctaccagcccagaagcgtattcaccaacttctcccaat
tttgctggttccccgacttctccaggtggtcctacttctccaggctatagcccaacatct
cccaccttcaacccgacgtctccccgccagtag
DBGET
integrated database retrieval system
