Coccidioides posadasii: 9695542
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Entry
9695542 CDS
T01332
Symbol
D8B26_008425
Name
(RefSeq) uncharacterized protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpw
Coccidioides posadasii
Pathway
cpw03013
Nucleocytoplasmic transport
cpw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9695542 (D8B26_008425)
03015 mRNA surveillance pathway
9695542 (D8B26_008425)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpw03019
]
9695542 (D8B26_008425)
Enzymes [BR:
cpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
9695542 (D8B26_008425)
5.6.2.5 RNA 5'-3' helicase
9695542 (D8B26_008425)
Messenger RNA biogenesis [BR:
cpw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
9695542 (D8B26_008425)
mRNA cycle factors
Common to processing body (P body) and stress granule
9695542 (D8B26_008425)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
NPHP3_N
Helicase_RecD
SLFN-g3_helicase
PIF1
UvrD-helicase
nSTAND3
AAA_16
PhoH
AAA_22
Ribosomal_S13_N
AAA_32
ATPase
Motif
Other DBs
NCBI-GeneID:
9695542
NCBI-ProteinID:
XP_003070047
UniProt:
C5P5B2
LinkDB
All DBs
Position
3:complement(join(3257832..3260847,3260916..3261205))
Genome browser
AA seq
1101 aa
AA seq
DB search
MAAEAFTQMGNHMVSDSASTINAVDDMSTVDGDENILKMAGGPRRRQHDDEDEGSEMYDE
EDDDDLESLSSIAVDGAIKTSTNKAEEEKELPPHACCYCGIHNTSSVVKCLACNKWFCSA
RGNTSSSHIVNHLVRARHKEVQLHPESALGETVLECYNCGTRNVFLLGFIPAKSDTVVVL
LCRQPCAAMPSSKDMNWDTSLWQPLIEDRSFLPWLVASPSDQEQLRARHLSPQMIAKLEE
MWKENSSATVEDLEKATGVDDEPAPVLLRYDDAYQYQNVFGPLVKIEADYDRKLKEAQSQ
DGLIVKWDLGLNNKHLASFVLPKLELGDVKLAVGDEMRLKYSGELRPKWEGVGYVIKIPN
NQSDEVTIELRAKGDHKSVPTECTHNFTADYVWKSTSFDRMQSAMKTFAVDELSVSNYIF
HRLLGNEVAAGPMKTQLPKKFTAPGLPGLNPSQINAVKAVLQKPLSLIQGPPGTGKTVTS
ATVIYHLAKISGGQVLVCAPSNVAVDQLCECIHRTGLKTVRVTAKSREDVESPVRHLSLH
EQVRNNDSNVELMKLTQLKNDMGELSSQDEKKFKQLTRAAEKEILSNADVICCTCVGAGD
PRLAKFKFRTVLIDESTQSSEPECMIPLVMGCKQVVLVGDHLQLGPVIMNKKAAKAGLNQ
SLFERLVILGCAPIRLNVQYRMHPCLSAFPSNMFYEGSLQNGVTSDDRLLKDVDFPWPVA
DKPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPSAIGIITPYEGQRSY
VVSSMQLNGTYKKEAYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVA
LTRAKYGLVILGNPKVLSKHPLWNYLLRHFKEGNCLVEGPLSNLQTSLVQFSRPKQAYRG
PQRFQMAYNHASSMAAGLMNGRNGQHTDFQDSGSVASYIPDDVSSVHSSAFGGVAIPPGY
PQMFQNFSEVWPQLPNNRRANGSRATGAPSVAEESVAATESDVTGSMIDGRSVGQGGVSL
SGLSIHDVTKQPSLSQSDRLKHYVESSGRAEPYRGYENTSVFGGSSASMRIPRGNVSHAT
DDDDARSISTAFASQIGGTYD
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggaggcgttcactcaaatgggaaaccatatggtttccgattctgcatcaaca
atcaatgccgttgatgatatgtcaactgtcgatggcgacgaaaatatcttgaagatggcc
ggtgggccgcggaggcgacaacatgatgacgaagatgaaggctcagaaatgtatgatgaa
gaagatgacgatgacttggagagtctctcaagtattgcagttgatggagctataaagacg
tcgaccaacaaagcggaggaagaaaaggaattaccaccacatgcttgttgttactgtggt
atacacaatactagcagcgttgtcaaatgtcttgcctgcaacaaatggttctgcagtgcc
cgcgggaatacatcctcttcgcacatcgtgaaccatcttgttagggccagacataaggag
gtccaactccaccctgaatctgcattgggtgaaactgtgcttgaatgttataattgtggt
acaagaaatgtgtttctccttggctttattccagcaaagtctgacaccgtggttgttttg
ctttgtcgtcaaccatgtgccgcaatgccgtcttccaaagacatgaactgggacacttcc
ctttggcaaccccttattgaggatcgctcattccttccctggcttgtagcttctccttca
gaccaggagcaactacgagctcgtcacctcagtccgcagatgattgcgaaattggaagaa
atgtggaaggagaactctagtgctaccgtcgaagacttggagaaagcgaccggcgtcgat
gacgagcctgcgcctgtcttgcttcgatacgacgatgcctatcagtatcaaaacgttttc
ggacctctcgtgaagatagaggcagactatgatcgcaagttaaaggaagcgcagtcgcaa
gatggattgatagtcaaatgggaccttggtttgaataacaagcatttagcgagcttcgtc
ctgcccaaactggagttaggtgatgtgaaactggctgtgggtgatgaaatgcgtcttaaa
tattcgggcgaattacgaccaaaatgggagggtgttggatacgttattaagattccgaat
aatcagtccgatgaagtcactatcgagcttcgggccaagggtgatcataagtcggtgcct
actgagtgcactcacaatttcacagcggactatgtttggaagtcaacctccttcgataga
atgcagtccgccatgaagacctttgctgttgatgagctgagtgtttctaactatatcttt
catcggcttttgggaaatgaagtcgctgctgggccgatgaaaactcaattgcccaagaag
ttcacagcacccggtcttcctggcctgaaccccagtcaaattaacgctgtcaaagctgtc
cttcaaaagcccttgagcttgatccagggccctcccggtaccggaaaaactgttacttct
gcgacagttatttatcatctagcaaaaattagtggtgggcaggtgctggtttgcgctcca
tccaatgttgctgtcgaccaattgtgcgaatgcattcatagaacaggcttgaagaccgtt
cgtgtcactgcaaaatcaagagaggatgttgaatcgcctgttcgtcatctttcacttcat
gagcaagtccgcaacaatgacagcaatgtcgagttgatgaaactgacgcaattgaaaaat
gacatgggagaactatcgagccaagatgagaaaaagttcaaacaactcacacgtgctgcg
gaaaaagaaattcttagcaatgcagatgttatctgctgcacctgtgtgggtgctggggat
ccaagacttgccaaattcaaattccggaccgttttgatcgacgaatccacacagtcatcg
gagcctgaatgtatgatccctcttgtgatgggatgcaaacaagttgttcttgttggggac
catctgcagcttggcccggttatcatgaacaagaaggcagctaaggctgggttgaatcaa
tcacttttcgagcgcttggtgatcctgggatgtgctcctattcggctgaatgtccaatac
cgaatgcacccttgtctgtcagctttcccatctaacatgttttatgaggggtctctgcag
aatggcgtgacgagtgatgatcgtcttttaaaagatgtggacttcccctggcctgttgcg
gataagcccatgatgttctggtcgaatcttggcaacgaagaaatctctgcttctggaacg
tcgtacctgaatcggacggaggccgcgaacgtggagaaaattgttactcgattcttcaaa
gccggcgttaaaccgtcagccatcggtattatcactccctatgaaggacagcgcagttat
gtcgtcagctccatgcaacttaatggaacatacaagaaagaggcctacaaggagattgaa
gtcgcatcagttgacgccttccaaggccgagaaaaggacttcattgtgctgtcctgtgtc
aggtccaacgaccatcagggaatcggattcttgagcgacccacgtcgtctaaatgttgcc
cttacacgtgccaagtacggtcttgttatcctaggaaaccccaaggttctttcgaagcat
cctctctggaactacctcctccgccatttcaaagaggggaattgcctggtggaaggtcct
ttgtcgaatcttcagacttcccttgtgcaattcagtcgcccaaagcaggcgtatcgcggc
ccacagcggttccaaatggcgtataatcacgcttcaagcatggccgcaggattgatgaac
ggtcgaaatggacagcacaccgacttccaggactctgggtctgtcgccagttatattccg
gacgatgtttcttcggttcactcttccgcctttggcggtgttgccatcccacctggttac
ccgcagatgttccaaaatttcagcgaggtgtggccgcagcttcctaacaatcgtcgtgca
aatggatcccgagcgacaggtgcgcccagcgtcgctgaagagtccgtggcggccaccgaa
tccgacgtgacgggaagtatgatcgatgggcggagcgtggggcaaggaggggtcagtctc
agcggattaagcattcatgatgtgaccaaacagcccagtcttagccagtccgatcgcctg
aaacactatgttgaatccagcggccgtgcggagccgtatagaggatacgaaaacacaagc
gtgtttggcggaagttcagcgagcatgcggattccccgcggcaacgttagccatgctacc
gacgacgatgacgcccgcagcatctctaccgcattcgcgagccaaataggaggaacatat
gattga
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