Coccidioides posadasii: 9697039
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Entry
9697039 CDS
T01332
Symbol
YTH1, D8B26_008118
Name
(RefSeq) RNA-binding component of cleavage and polyadenylation factor
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cpw
Coccidioides posadasii
Pathway
cpw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9697039 (YTH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpw03021
]
9697039 (YTH1)
03019 Messenger RNA biogenesis [BR:
cpw03019
]
9697039 (YTH1)
Transcription machinery [BR:
cpw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
9697039 (YTH1)
Messenger RNA biogenesis [BR:
cpw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
9697039 (YTH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_9
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
9697039
NCBI-ProteinID:
XP_003071545
UniProt:
C5P142
LinkDB
All DBs
Position
5:456259..457014
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AA seq
251 aa
AA seq
DB search
MAEVHRVADRIVSADSPRDPNFTNFAFSPFLRKTFGFGLASDVPVCKAYREGHCPLGPMC
PDRHPTPSRISTATSPAIAPSSTHGSLVCKHYLKGLCKKGIKCEYLHEYNLRRMPECQAF
ARSGYCANGDDCLYQHVSEEAKLPPCEHYDKGFCPLGPLCAKKHVRRKICPFYLAGFCPE
GRVCTTGAHPRWPENLPKPTVKVEKTAEEIEREKARIREEQEKEEEREREWRRERGRGGR
FMGGRFRGKRL
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggttcatcgtgttgcagaccggatcgtatccgccgacagtcctcgcgaccca
aacttcaccaacttcgccttcagcccgttccttcgcaagacgttcggttttgggctcgcc
tcggatgttcccgtctgcaaggcttatcgagaaggccactgcccactcgggcctatgtgc
ccagaccgccatccaaccccctcccgaatctctacggctacttcgcccgcgattgctcca
tcgtctacacacggcagccttgtatgcaagcattacttgaaggggctatgcaagaaggga
ataaaatgcgaatatctacatgaatataatttgcgccgcatgccggaatgccaggctttt
gcgcgaagcgggtattgcgccaacggcgacgattgtctatatcagcacgtttccgaagaa
gccaaattaccaccttgtgaacattatgataagggattctgtccgttagggcctttatgt
gcaaagaagcatgttcgcaggaagatatgtcctttctacttggcaggattttgtcctgag
ggaagagtttgcacgacgggtgctcatccaagatggccggagaatttgccgaaacccacg
gtgaaagtggaaaaaactgcggaggaaatcgagagagagaaggctagaatcagagaggaa
caggagaaagaggaggagagggaaagagaatggaggagagaacgaggtcgcggcgggcgg
tttatgggtggaagatttcgcgggaagaggctatag
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