Coccidioides posadasii: 9697140
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Entry
9697140 CDS
T01332
Symbol
PRP16, D8B26_003947
Name
(RefSeq) DEAH-box RNA helicase prp16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cpw
Coccidioides posadasii
Pathway
cpw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9697140 (PRP16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpw03041
]
9697140 (PRP16)
Enzymes [BR:
cpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9697140 (PRP16)
Spliceosome [BR:
cpw03041
]
Complex C
Other components
Step II factors
9697140 (PRP16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
SLFN-g3_helicase
SRP54
ATPase
Flavi_DEAD
AAA_16
Cas3-like_C_2
NACHT
Motif
Other DBs
NCBI-GeneID:
9697140
NCBI-ProteinID:
XP_003071646
UniProt:
C5P1E3
LinkDB
All DBs
Position
2:complement(join(4618357..4618677,4618736..4620276,4620330..4621479))
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AA seq
1003 aa
AA seq
DB search
MVREDSPKRRKLDPDRYASSSPQPRAPRHVFKRQRRDNNGLSTPRGSHNGSSTPHQHEFD
GPEPLVNYEDAMALDRDWYAGDEFGHTFGDETHNPFGGPDNSWKDMQREAALSEKKNNRR
FNARAVQKQKDVDAWETNRMLTSGVAQRRDYEADFEDDEDSTRVHLLVHDLRPPFLDGRT
IFTKQLEPVPAVRDPQSDMAVFSRKGSKVVRERRQLKERQKQAQDATNVAGTALGNLMGI
KEDEGDSAAAIPGEEDHKGGSKFAQHLKKNEGVSAFSRSKTLREQREFLPAFAVREELLR
VVRDNQVVIVVGQTGSGKTTQLTQFLYEDGYGALGMIGCTQPRRVAAMSVAKRVSEEMEV
KLGGLVGYAIRFEDCTSNETVIKYMTDGVLLRESLVQPDLDKYSCIIMDEAHERALNTDV
LMGLIKKVLARRRDLKLIVTSATMNAERFSKFYGGAPEFFIPGRTFPVDIQYSRSPCEDY
VDSAVKQVLAIHVSQGPGDILVFMTGQEDIEATCDLIHERLALLNDPPKISVLPIYSQMP
ADLQAKIFDKAPPGVRKVIVATNIAETSLTVDGIMYVVDCGFSKLKVYNPRMGMDTLQIT
PISQANASQRAGRAGRTGPGKAYHLYTELAFKNEFYIQTIPEIQRTNLANTVLLLKSLGV
KDLLDFDFMDPPPQDTITTSLFDLWALGAIDNLGDLTPMGRRMSAFPMDPSLAKLLITAS
EEYECSDEMLTIVSMLSVPSVFYRPKERQEESDAAREKFFVPESDHLTLLHVYTQWKANG
YSDGWCVRHFLHPKALRRAKEIREQLSDIMCMQKMTLQSCGTDWDIIRKCICSGYYHQAA
RVKGIGEYINLRTSVTVQLHPTSALYGLGFLPDYVVYHELILTSKEYMSCVTSVDPRWLA
DLGGVFYSIKEKGYSARERRVTEHEFNRRMEIEAQMAADRERAALIASQEAEKEKLKRRQ
EATVGSATVGVRSAVRRPASAAATKTSGSVVRRPPAKRVGRGF
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggtccgagaagacagcccaaagcggcgcaagcttgatccggaccgatacgcgtcctcc
tctccccagccccgagcaccaaggcacgtcttcaaacgccagagaagggataataacggg
ctatctacgccacggggaagtcacaatggctcctcaacccctcatcaacacgagtttgat
ggaccggagcctctcgtcaattatgaggatgccatggcattggatcgagactggtacgct
ggcgacgaattcggacataccttcggtgacgaaacacacaatccatttggcggaccagat
aactcatggaaagatatgcagcgagaagctgcattgtctgagaagaaaaataatcgccgg
tttaatgcgcgtgcggtgcagaaacagaaagacgtggatgcgtgggaaacgaatcggatg
ttgacgtccggtgtggcgcagaggagagattatgaggcggattttgaagatgatgaagat
tcgactcgggtgcacttgttggttcatgatttaaggccgccttttttagatgggaggacg
atatttacgaagcagttggaacctgtgccggccgtgagggatccacaaagcgacatggct
gtctttagccggaagggcagtaaggttgttcgggaaagaaggcagctcaaagagcgacaa
aagcaggcccaggatgctacgaatgttgctggaactgcgttgggtaatcttatgggtatc
aaggaagatgaaggtgatagtgcagcggctatacccggcgaagaagaccacaaagggggc
agcaaatttgcgcagcacttgaagaagaatgaaggtgttagcgcattcagcaggagcaaa
actcttcgtgaacaacgagagtttctaccggcattcgcagtcagagaagaattattacga
gttgtcagagacaatcaggttgtgatagttgttggccagaccggctctgggaagactact
cagctaacccaattcttgtacgaagatgggtatggggcgctgggcatgatcggctgtaca
caaccccgacgtgttgcggcgatgagtgtagcgaaacgtgtgagtgaggagatggaagtt
aagcttggtggtctcgttggatatgcaatccgttttgaagattgcactagcaacgaaact
gtcataaaatatatgaccgacggcgtgctcctaagagagtctttggtgcagcctgacctt
gataaatattcatgcatcatcatggacgaagcccatgaacgggctctaaacacagatgtt
ttaatgggattaatcaaaaaggttctcgcacgtcggcgggatctgaagctgattgtgaca
tcggccacaatgaatgctgagcggttctcgaaattctacggaggtgcaccggaattcttc
attccaggaagaacttttcctgttgacatccagtattcccggtctccctgcgaagactat
gtcgacagcgctgttaaacaggtccttgctattcacgtttcccaaggtccaggagatatc
cttgtattcatgacgggtcaggaggatatcgaggctacttgcgaccttatacatgagagg
cttgctcttctaaatgatcctccaaaaatcagcgtcctgccgatctatagtcaaatgccc
gcggatctgcaagccaaaatctttgataaagcgcctcctggagttagaaaggtgattgtt
gctactaatattgccgaaactagtctaacagtcgatggtatcatgtacgtggtcgattgt
ggtttctccaaattgaaggtttacaatccacgcatgggtatggacaccttacagattacg
ccaatctcccaggcgaatgcatcacagcgcgcaggtcgagctgggcgaacgggtccaggg
aaagcctatcatttatataccgaactggctttcaagaatgaattctatattcaaacaatt
ccagagattcagcgaaccaatcttgctaacaccgttctcctactcaaatcgctgggagtc
aaagatttgctggattttgatttcatggatccgcctccacaggacactatcacaacgtcc
ctattcgacctttgggcattgggtgctattgataatcttggggatctcacgcccatgggc
cgccgtatgagcgccttccccatggacccatctctagcaaaactgctcattactgcgtca
gaggagtatgaatgcagcgatgaaatgcttaccatcgtctcgatgctctcggtgccgagt
gtcttctatcgcccgaaagaacgccaagaagaatccgacgctgctcgcgaaaagtttttc
gtgcccgaatctgatcaccttaccctccttcacgtttatactcaatggaaagccaacgga
tattcagacggttggtgtgtgagacacttccttcaccccaaggcgctgcgacgggccaaa
gagattcgagaacaactctccgacatcatgtgcatgcaaaagatgacacttcagagctgc
ggcaccgattgggatattattcgaaaatgtatttgttccggatattatcatcaggccgct
agagtcaaaggaattggcgaatatataaatctacgaacgagtgtcacagtgcaactccac
cctacaagcgctttatacggccttgggttcttacctgattacgttgtatatcatgaattg
atcctgaccagcaaggagtacatgtcctgtgtcacatctgttgatcctcgttggcttgct
gatcttggcggcgtattctactctattaaagagaagggttattctgcccgcgagcgccgt
gtcacagagcatgagtttaaccgtcgcatggaaatagaagctcaaatggcggccgatcga
gaacgagccgccctgatagcaagtcaagaagcagaaaaagaaaagctgaagaggcgtcaa
gaggccactgttggctccgcaacggtgggagtaaggtctgcggttcgaaggcctgcgtcg
gcagcagcaacgaagacgagcgggagcgtggttaggagacctcccgcgaagagggttggg
cgaggattctag
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